Loxodonta africana (African savanna elephant): 100673536
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Entry
100673536 CDS
T04351
Symbol
COL20A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100673536 (COL20A1)
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GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Laminin_G_2
DUF4959
Motif
Other DBs
NCBI-GeneID:
100673536
NCBI-ProteinID:
XP_023396572
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MVSAADRRKSGAPFHCTPAVPMDMVFLVDGSWSTGHRNFQLITDFLASVVSPFEIDPNKV
QVGLTQYSGDPQTEWDLNSFSTKEEVFSAIGRLHYKGGNTFIGLALTHVLEQNLRPAAGL
RVEAVKVVVLVTDGKSQDDACTAARVLKSLSTDVFTVGVKNADEAELRLLASQPLDITVH
NVLDFPQLGTLSSLLSRLICHHVQGRGPRQRDPAAAPALDSLPAPTGLVLTPVTCSSIRL
SWTPVPQPPLKYLIVWRPSRGSAPREVVVETPTSSAELRNLTSSTEYLMSVLPVYAGGVG
EGLQGLATTLPLSPPHTLALATVTPQTIHLTWQNVPGATQYLVQCLLTPPKGEEEGREVR
VGRPEVLLEGLEPGXNYAISVQSLRGSEVSEARGVQARTPALAPPRHLDFENVTHNSARV
LWEGPQTPARLCRATYISSKGDHLGQVEIPGNASSATLGPLSSSTTYTVRVTCVYPGGGS
SALTGRVTTQKVPSPSQLTVMEMPGDEVQLEWAAAAASDVLVYQIKWTPLSDGKAHEISV
PGNLCSAVLPGLGRNAEYDITILAYYHDGAQSDPVSLCYTPSSATRDLCAVSQSPPSNLA
LASETPNTLKVSWTPPHGHVLHYRLTYALASSSGPETSISVPGPRSHVTLPDLLAATKYR
VLVSAVYGAGESMAVSATGQTACPTLSPDSSLPGFDLMAAFXLVEKEYTSLSGVAMEPSA
FGVAKTFTLFKDTQLTRRASDIHLAALPPEHTIIFLLRLLPETPREAFVLGQITTEDFQP
ALGVLLDAGWKSLTYFNHHPSAALQGVTFHLQDVKKIFFGSFHKVHVAMGRSKVQLYVDC
QKVAEKPFGELDSLPTTGFVMLGRLAKARGPRSSSATFQLQTLQIVCNGSWAEEDRCCNL
PALGDAETCPTSPSVCTCSSETPGPSGPQGPPGLPGKSSTPGEQGFPGPRGPPGIKREKG
DHGLPGSQGLPGHHGAPGRVSLQGPKGMRGLEGTDGPPGPPGPRGLQGVAGTRGAGGERG
PPGAVGPTGLPGPKGERGEKGELQSLATIYQLVSQACESAIQTHMLKFNSFLHESTRPPM
PVLEGKMRPGGPGPPGVHSKAGPGKQARGSGPKDGGT
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggtctccgctgcagacagaaggaagtcaggggccccattccactgcacacccgctgtg
cccatggacatggtcttcctggtggacgggtcctggagcactggccacaggaacttccag
ctcatcacggacttcctggccagtgtcgtgtcgccctttgagattgaccccaacaaagtc
caagtaggcctgactcagtacagtggggacccccagacggagtgggacctgaactccttc
agcaccaaggaggaggtgtttagcgccatagggcgcctccactacaagggaggcaacacg
ttcataggccttgccctgacccacgtgctggagcagaacctgaggcctgccgccgggctc
cgagtggaggcggtgaaggtggtggttctggtgacagatggcaagtcccaggatgatgcc
tgcactgctgcccgtgtcctcaagagcctgagtactgatgtctttaccgttggggtgaag
aacgctgatgaggctgagctgaggctcctggcatcgcagcctctggacatcactgtccac
aacgtgctggacttcccccagctcggcacactgtccagtctgcttagccgccttatctgc
catcatgtccagggcaggggcccacggcaaagagacccagcggcagctccagccctggat
tcactccccgctcccactggcctggtcctgaccccggtgacctgctccagcatccgcctg
tcctggactccagtcccacagccgcccctcaagtacctgattgtgtggcgcccttccagg
ggcagtgcccccagggaggtggtggtggagacacccacctcatctgcggagctccgaaac
ctcacctccagcacagagtacctgatgtccgtgctccctgtctacgcaggcggggttggc
gagggcctccagggcctggcaaccacattgcctctgtctccgccccacacgctggccctg
gccacagtgacaccccagaccatccacctcacctggcagaacgtgcctggtgccacccag
tacctggttcagtgtttgctcacccctcccaagggcgaggaggaggggagagaggtgagg
gtggggcggcccgaggtgctgctggaaggcctggagccgggctgaaactacgccatctca
gtgcagagcctgcgggggtccgaggtcagcgaggcccggggtgtccaggccaggacccca
gccctggcccctccgagacacctggactttgagaatgtgacccacaactcggcccgcgta
ctctgggagggcccccagacgcctgcacgcctctgccgggccacctacatctccagcaag
ggtgaccacttgggacaggtggagattcccgggaacgcctcctcggctaccctgggccca
ctctcctcctccaccacctacactgtccgcgtcacctgcgtctaccccgggggcggctcc
tccgcactgaccggccgcgtgaccacgcagaaagtccccagcccgagccagctgacggtt
atggagatgcctggggatgaagtccagctggagtgggcggccgcagcagcatctgatgtg
ctggtctaccaaatcaaatggacacccctgagtgatgggaaggcccatgagatctctgtg
cctgggaacctctgctcagctgtcctgccaggcctgggaaggaatgctgaatatgacatt
accatcctggcctactaccatgatggtgcccaaagcgaccccgtgtccctctgctatacc
ccctcttctgccactcgtgatctctgcgcagtgagtcagagtcccccctccaacctggcc
ctggcctcggagacacccaacaccctgaaggtcagctggacgcccccacatggccacgtc
ctccactacaggctcacctatgcactagcctccagctcaggacctgagacatcgatctcc
gttccaggacccaggagccacgtgacactccctgacctcctggcagccaccaagtacagg
gtcctggtgtcggctgtctatggggcaggggagagcatggctgtgtcagccaccggccag
acagcctgccccacgcttagccccgacagctcccttccagggtttgacctcatggctgcc
ttcngcttggtggagaaggaatacacctccctcagcggggtggcaatggagccctctgca
tttggggtggccaagacattcacactcttcaaggacacccagctgacacgcagagccagt
gacatccacctggccgccctcccacctgagcacaccatcatcttcctcctgcgcctgctc
cctgagacgccacgcgaggcctttgtgctggggcagatcacgaccgaggactttcagcct
gcccttggtgtcctgctggatgctggctggaagtcactgacctacttcaaccaccacccc
agcgctgccctgcagggggtcaccttccatctgcaggatgtgaaaaagatattcttcggg
agtttccacaaggtgcacgtggctatgggccgctccaaggtccagctctacgtggactgc
cagaaggttgctgagaagcccttcggggagttggatagcctgcccaccactggcttcgtc
atgctggggaggctggccaaggccaggggtccccgcagcagctcagccactttccagctc
cagaccctccagattgtctgcaatggctcctgggcggaggaggacaggtgctgcaacctg
cctgccttgggggatgccgagacctgccccacctcgccttctgtgtgcacctgctcctca
gagactcctgggccttctggcccccaagggcctccaggactccctgggaagagcagcacc
cctggagagcagggcttcccagggcccaggggtccaccggggatcaaaagagagaagggg
gaccacggactcccgggctcacagggcctccccggccaccatggtgcccccgggagagtc
agcctccagggaccaaagggaatgagaggactggaggggactgatggcccacccggaccc
cctggccccagggggctccagggcgtggcgggtacccggggggctggtggggagcgagga
cccccaggggctgtgggacctacagggctgccagggccgaaaggggaacgaggggagaag
ggcgagctgcagtcactagccaccatctaccagcttgtgagccaggcctgtgagtcggcc
attcagactcacatgctcaagttcaactctttcctccatgagagcaccaggcccccaatg
cccgtcttggaggggaagatgaggccaggtgggcctggaccccctggtgtacacagcaag
gccgggcccggaaagcaagcccgtggcagtggccccaaggatggaggtacgtaa
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