Loxodonta africana (African savanna elephant): 100675005
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Entry
100675005 CDS
T04351
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
lav
Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lav04515
]
100675005 (PCDH18)
Cell adhesion molecules [BR:
lav04515
]
Cadherins
Protocadherins
100675005 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
BBS1
TMEM154
PAH
Syndecan
Cadherin_C_2
MPS-4
G1_gp67_N
Motif
Other DBs
NCBI-GeneID:
100675005
NCBI-ProteinID:
XP_010588861
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MNTKMRFRFIFALLTVSFSHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLFKLPNPSA
VRFRAMQRGNSPLLVVSEDNGEISIGAKIDREQLCQKNLNCSIEFDVITLPTEHLQLFHI
EVEVLDINDNSPQFSRSLIPIEISESAAIGTRIPLDSAFDPDVGENSLHTYSLSANDFFN
IEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSVLKISIADSNDNS
PAFEQQSYILQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIIETFKIDSER
GYLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEININLMSPGK
EEISYVFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTNATL
DREKRSEYSLTVIAEDKGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGAY
ITTVSATDPDLGENGHVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVNQITF
VVEARDGGSPKQLVSNTTVVLTIIDENDNIPVVIGPALRNNTAEITIPKGAESGFHVTRI
RAIDRDSGVNAELSCSIVAGNEENIFVIDPRSCDIHTNVSMDSVPYTEWELSVIIQDKGN
PQLHTKVLLKCVIFEYAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATR
CNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSHHRSSPSSSP
TLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQGQY
QPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSD
LFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQQHP
HQSLEDDIQPADSSEKKKSFSTFGKDSPNDEDTGDTSTSSLLSEMSTVFQRLLPPSLDTY
SECSEVDRSNSLERRKGPLPTKTVGYPQGVAAWAASTHFQNPTTSSGPPLGTHSSVQPSS
KWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASELVAEINKLLQDVRQS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgaacactaaaatgcgctttaggttcatttttgcactcttgacggtgtctttcagccac
gatgtactgggcaagaatttgaaatacaggatttatgaggaacagagggttgggtcagta
attgccagactatcagaggatgtggccgatgttttatttaaactacctaatccttctgct
gttcgttttcgagccatgcaaaggggaaattctcctctactagtagtcagtgaagataat
ggggaaatcagcataggggctaaaattgaccgggaacaactatgccagaaaaacttgaac
tgctccatagagtttgatgtgatcactctacccactgagcacctgcagcttttccatatc
gaagttgaagtcctggatattaatgacaattctccccagttttcaagatctctcataccg
attgagatatctgagagtgcggccatcgggactcgtattcctctggatagtgcatttgat
ccagatgttggggaaaactccctccacacatactcgctctctgccaatgatttttttaat
atcgaggtacggaccaggactgatggagccaagtatgcagaactcatagtggtcagagag
ctggaccgggagctgaagtcaagctatgagcttcagctcactgcctcagacatgggggtg
cctcagaggtctggctcatccgtactaaaaataagcattgcagactccaatgacaacagc
cctgcttttgagcagcagtcttatatattacaactcttagaaaactccccagttggcact
ttgctccttgatctgaatgccactgatccagatgagggcgctaatgggaaaattgtatat
tccttcagcagtcatgtgtctcccaaaattatagagacttttaaaattgattccgaaaga
ggctatttgactcttttcaagcaagtggattatgaaatcaccaaatcttatgagatcgat
gtgcaggctcaagatctgggtccaaattcaatcccggctcattgcaaaattataattaaa
gttgtggatgttaatgacaataaacctgaaattaacataaatctgatgtctcccggaaaa
gaagaaatatcttatgtttttgaaggggatcccattgacacatttgttgctttggtcagg
gttcaggacaaagattctgggctgaatggagaaatagtttgtaagcttcatggacatggt
cactttaaacttcagaagacttatgaaaacaattatttaatcttaactaatgctacactg
gatagagaaaagagatctgaatacagtttgactgtaatagcagaggacaaggggacacca
agtctctctacagtaaaacattttactgtccaaatcaatgatataaatgacaatccaccc
cacttccagagaagccgatatgaatttgtcatctcagagaataactcgccgggggcatat
atcaccaccgtttcagccacagatcctgatctaggagaaaatgggcatgttacatatacc
attttggagagtttcatcctgggaagctctataactacatatgtaaccattgacccatcg
aatggagccatctacgccctcagaatctttgaccacgaagaagtaaatcagatcactttt
gtggttgaagcaagagatggagggagtccaaagcaacttgtaagcaataccacggttgtg
ctcaccatcattgatgaaaatgacaacatccctgtggttatagggcctgcactacgcaat
aatactgcagaaatcaccatccccaaaggggccgaaagtggctttcatgtcacaagaata
agggcaattgacagagactcgggggtaaatgcggaacttagctgctccatagtagcaggt
aatgaggagaatatcttcgtaattgatccacgatcatgtgacatccataccaatgtgagc
atggattctgttccctacacagagtgggagctctcagtcatcatccaggacaaaggcaat
cctcagctgcataccaaagtcctcctgaagtgcgtgatttttgaatatgcagagtctgtg
acaagtacagcaatgacctcagtaagccaggcatctttggatgtctccatgattataatt
atttccttaggagcaatctgtgcagtattgttggtgattatggtgctgtttgcaactagg
tgtaaccgagaaaagaaagacactagatcctacaactgcagggtagcagaatcaacttac
cagcaccacccaaaaaggccatccaggcagattcacaaaggggacattacattggtgccc
acagtaaatggcacactgcctatcagatctcatcacagatcatctccatcttcatctcct
accctggaacgagggcaaatgggcagccggcagagtcacaacagccaccagtccctcaac
agtttggtgacaatctcatcgaaccacgtgccagagaatttctcgttagaactcacccat
gccactcctgctgttgagcaggtctcccagcttctttcaatgcttcaccaggggcaatat
cagccaaggccaagctttcgaggaaacaaatattccaggagctataggtacgcccttcaa
gacatggacaaatttagcttgaaagacagtggccgtggtgacagtgaagcaggagacagc
gactatgatttggggcgagactctccaatagacaggctgctgggggaaggattcagcgac
ctgttccttacagatggaaggattccagcagctatgaggctttgcacggaggagtgcaga
gtcctgggccactccgaccagtgctggatgccacccctgccctcgccatcttctgattac
aggagtaacatgttcattccgggggaggagttcccagcacagccccagcagcagcatcca
catcagagtctcgaggacgacatccagcctgcagattccagtgagaagaagaagagtttt
tccacctttgggaaggactccccaaacgacgaggacactggagataccagcacgtcctct
ctgctctcagaaatgagcaccgtattccagcgccttctacccccttccctggacacctac
tcagagtgcagtgaggtggaccgatccaactccctggaacgccgaaaggggcccttgcca
accaaaaccgtgggctacccacaaggggtggcggcctgggcagccagtacacattttcaa
aatccaaccaccagttccgggccgccgcttggaactcactccagtgtgcagccttcttca
aagtggctgccggccatggaggagatccctgaaaactacgaggaagatgattttgacaat
gtgctcaaccacctcaatgatgggaagcatgaactcatggatgccagtgagctggtggct
gagattaacaaactgcttcaagatgtgcgccagagctag
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