Loxodonta africana (African savanna elephant): 100675826
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Entry
100675826 CDS
T04351
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04151
PI3K-Akt signaling pathway
lav04510
Focal adhesion
lav04512
ECM-receptor interaction
lav04974
Protein digestion and absorption
lav05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100675826 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100675826 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100675826 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100675826 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100675826 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lav00536
]
100675826 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100675826 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100675826
NCBI-ProteinID:
XP_003405792
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCQGQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDVKDCLSPEIPFGECCPICPTDLTTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPTGPAGERGEXGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPAGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGEAGPVGASGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIAGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAGDNLRQHDVEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNLETG
ETCVYPNPASVPKKNWWSSKGKERKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYMDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYSALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgaccctgctcgtcgccgctgtc
cttcggtgtcagggccaggatgtccaggaggctggcagctgtgtgcaggatgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtttgtgacactggg
actgtcctctgcgacgacataatctgtgaagacgtgaaagactgcctcagccccgagatc
cccttcggagagtgctgccctatctgcccaactgacctcaccactgccagtgggcagcca
ggaccaaagggacagaaaggtgaacctggagatatcaaggatattgtaggacccaaagga
cctcctgggcctcagggacctgcaggcgaacaaggccccagaggtgaccgtggtgacaaa
ggcgaaaaaggtgcccctggacctcgtggcagagatggagagcctggaacccctggaaat
cctggcccccctggtcctcctgggccccctggcccccctggtcttggtggaaactttgct
gcccagatggccggaggatttgatgagaaggctggaggtgcccagatgggagtaatgcaa
gggccaatgggccccatgggacctcgaggacctccaggccctgctggtgctcctggacct
caaggatttcaaggcaatcctggtgagcctggtgaacccggagtttctggccccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggtgaagctggaaaacct
gggaaatctggtgaaagaggccctcctggccctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagcaggtgccccaggtgttaagggtgagagtggctcacctggtgagaatggttctccg
ggccccatgggtccccgtggtctgcctggtgaaagaggacggactggccctgccggtgct
gcgggtgcacgtggcaacgatggtcagccaggccccgcagggcctccaggtcctgttggt
cctgctggtggtcctggcttccccggtgctcccggtgccaagggtgaagctggccccact
ggggctcgtggtcctgaaggcgctcaaggtccccgaggtgaacctggtactcctggctcc
cctgggcctgctggtgcctctggtaaccctggaactgatggaattcctggagccaaagga
tctgctggtgctcctgggattgctggcgctcctggcttccctgggccccgtggtcctcct
ggccctcaaggtgctactggtcctctgggccctaaaggtcagacgggtgaacctggtatt
gctggcttcaaaggtgaacaaggccccaagggagagcctggccctgctggcccccaggga
gcccctggccctgctggtgaagaaggcaaaagaggtgctcgtggagagcctggtggtgct
gggcctgttggtccccctggagaaagaggagctcctggcaaccgtggtttcccaggtcaa
gatggtctggcaggtcccaagggagcccctggagagcgagggcctagcggccttgctggt
cccaagggagccaatggtgaccctggccgtcctggagaacctggccttcctggagcccgg
ggtctcactggtcggcctggtgatgctggtcctcaaggcaaagttggtccttctggagct
cctggtgaagatggtcgccctggtcctccaggtcctcagggtgctcgtgggcagcccggt
gtcatgggtttccctggccccaaaggtgccaatggtgaacctggcaaagctggtgagaag
ggactgcctggtgctcctggtctgagaggtcttcctggtaaagatggtgagacaggtgct
gcaggtccccccggacccaccggacctgctggagaacgaggagagncaggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaggctggtgctcctggccttgtgggccccaggggtgaa
agaggtttcccaggtgaacgtggctctcctgggtcccagggccttcagggtgctcgtggc
ctccctggcactcctggcactgacggtcccaaaggtgcttctggcccagctggcccccct
ggggctcagggccctccaggtctgcagggaatgcctggtgagaggggagcagctggtatt
gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccctggg
aaagacggtggacgaggcctgactggtcccattggtccccctggcccggctggtgccaat
ggtgagaagggagaagttggacctcctggtcctgcaggaactgctggtgctcgaggcgcc
ccgggtgaacgtggagagactggaccccctgggcctgctggattcgctggtcctcctggt
gctgatggccaacctggtgccaagggtgagcaaggagaggctggccagaaaggagatgct
ggcgcccctggtcctcagggcccctcaggagctcctggaccacagggtcctactggagtg
actggtcctaaaggagcccgaggtgctcaaggccctccgggagccactggattccccgga
gctgctggccgtgttggacccccgggctccaatggtaaccccggcccccccggcccccct
ggtcctgctggaaaagatggtcccaaaggtgctcgaggagacagtggtccccctggccga
gctggcgaccctggcctccaaggtcctgctggagcccctggcgaaaagggagagcctgga
gaggatggtccctctggtcctgatggtcctccaggtccccagggtctggctgggcagaga
ggcatcgtcggtctgcctgggcagcgtggtgagagaggattccccggcttgcctggccca
tcgggcgagcctggcaagcagggagctcctggctcatctggagaccgaggtccccctggc
cccgtgggtcctcctggcctgactggtcctgctggcgagcctggacgagagggaagccca
ggtgctgacggcccccctggaagagatggtgccgctggagtcaagggtgatcgtggtgag
gctggtcctgttggtgcttctggagcccccggaccccctggctcacctggcccagccggc
ccaactggcaagcagggagacagaggagaagctggtgcacaaggtcccatgggacctgct
ggaccagctggagcccgaggaatagcaggccctcaaggcccccgaggtgacaaaggagaa
gctggagagcctggagagaggggactgaagggacaccgtggtttcactggtctgcagggt
ctgcctggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggtcctagaggtcctcctggccctgttggtccctctggcaaagatggcgctaatggaatc
cctggccctattggacctcctggtccccgtggacgttcaggagaaaccggccccgctggt
cctcctggaaatcctggaccccctggccctccaggtcccccaggccccggcattgacatg
tccgcctttgctggcctaggccagagagagaaaggccctgaccccctgcagtacatgagg
gctgacgaggcaggtgacaacctaagacagcatgacgttgaggtggatgccacactgaag
tccctcaacaaccagattgagagcatccgcagccccgagggctcccgcaagaaccccgct
cgcacctgccgcgacctgaaactctgccaccccgagtggaagagcggagactactggatt
gaccccaaccaaggctgcaccttggatgccatgaaggtcttctgcaacttggagactggc
gagacctgtgtctaccccaacccggcaagcgttcccaagaagaactggtggagcagcaag
ggcaaggaaaggaaacatatctggtttggagaaaccatcaatggaggcttccatttcagc
tatggagatgacaacctggctcctaacactgccaacgttcagatgaccttcctacgcctg
ttgtccactgagggctcccagaacatcacctaccactgcaagaatagcattgcctacatg
gatgaagctgctggcaacctcaagaaggccttactcatccagggctccaacgatgttgag
attcgggctgagggcaacagcagattcacatacagtgccctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccgatcacagaagacctctcgcctg
cccatcattgacattgcacccatggacataggagggcccgatcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
