KEGG   Loxodonta africana (African savanna elephant): 100677546
Entry
100677546         CDS       T04351                                 
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X3
  KO
K14792  rRNA biogenesis protein RRP5
Organism
lav  Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:lav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lav03009]
    100677546 (PDCD11)
Ribosome biogenesis [BR:lav03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    100677546 (PDCD11)
SSDB
Motif
Pfam: S1_RRP5 S1 Spt6_S1 HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C OB_RRP5 HAT_Syf1_CNRKL1_C Suf TPR_14 OB_RRP5_4th TPR_19 ARM_TT21 TPR_CcmH_CycH TPR_15 TPR_6 DUF2110 UTP6_C ARM_TT21_5th DUF7017 NRDE-2 ARM_TT21_C
Other DBs
NCBI-GeneID: 100677546
NCBI-ProteinID: XP_003409186
LinkDB
Position
Unknown
AA seq 1872 aa
MATLEESFPRGGTRKAHKSEKAFQQSVEQDNLFDITTEEESTKRKKSQKGPAKTKKLKIE
KRENIKLVKEKFEILTVETLCEGMRILGCVKEVSDLELVISLPNGLKGFVQVTEICDAYT
KKLNEQVAQEEPLKDLVRLPELFSPGMLVRCVVSSVGITEKGKKSVKLSLNPRNVNGVLS
AEALKPGMLLTGTVSSLEDHGYLVDIGVSGNRAFLPLQKAQEDTRQKNKGAKLKVGQYLN
CVIEEVKSSGGVVSLSVGHSEVSTAIATEEQNWTLNNLLPGLVVKGQVQKVTPFGLTVNF
LSYFTGLVDFMHLEPKKTGTYFSNQAVRACILFIHPRTRAVRLSLRPVFLQPGRPLTRLS
CQHLGAVLDDLPVHGFFNKAGATFKLKDGALAYARFSHLSNSKNVFKPEIFKPGNTHKCR
IIDYSPMDELALLSLRTSIIEAQYLSYHDTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLV
PPMHLADILMKNPEKKYSVGDEVKCRVLVCDPEAKKLMMTLKKTLVESRLPAITCYADAK
PGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCE
PAKERMLLSFKLLSDPEAKKEREGGSQKKRRAVHVGQLVDVKVVEKTEDGLEVAVLPHSI
PGFLPIPHLSDHVPNGPLLYHWLQAGDTLHRVLCLQSEGRVLLCRKPALVSAVEGGQDPK
SFSEIHPGMLLMGFVKSIKDYGVFVQFPSGLSGLAPKAAMSDKFVTSTSDHFVEGQTVVA
KVTNVDEEKQRMLLSLRLSDCTLGDVATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLA
EMTPGMILDLEVQEVLEDGSVVFGGGPVPGLVLRASRYHRAGQEVESGQKKKAVVLNVDM
LKLEVHVSLCQDLVNRKHKKLKKGSEYQATVQHLEESFAIASLVETGQLAAFSLTSHLND
TFRFDSEKLQVGQGVSLALKATQPGVTGLILAVEGPAAKRTMRQTRKESETVDEDEESDP
ALVVGTVKKHTLSIGDMVTGTVKSIKATHVVVTLEDGVIGCIHASNILDDVPVGTSPTSK
LKVGKTVTARVIGGRDVKTYKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPS
EKIKQYQAGQTVTCFLKRYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIG
QALNATVVGPDSCKAFLCLSLIGPHKLEKGEVAMGRVVKVTPNEGLTVSFPFGKFGRASI
FHVSDSYSETPLEDFVPQKIVRCCVLSTAGHVLTLSLRSSRTNPETKSKIEDPEINSIQD
IEEGQLLRGYVKAVEPHGVLFSLGPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLTAK
ILSLNHKRSLVRLSFLPSDTGKPDVLPASIGLPLLEQEERETETEREDQKGNEVKKNQKR
KEKNQKGQEEVKWLSEEKSEPRQPQVKKQGKRGRLESGSEQERVKKKQKKAGPSEEDDSG
VEVYYREGEEEIEEMTVLPKEKPAKLTEVPRLQLSSGFMWDVGLDSLTPALPPRRESSDS
EEDEKPHEATKKKNKKEKALEKQKAEKELSRIEEALMDPRRQPESADDFDRLVLSSPNSS
ILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTK
VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGSFLLGRG
QAGASHRVLQRALECLPQKEHVDVIARFAQLEFQLGDKERAKAIFENTLSTYPKRTDVWS
VYIDMTIKHGTQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL
EYVEAKSSVLED
NT seq 5619 nt   +upstreamnt  +downstreamnt
atggcaaccctggaagaaagtttcccccgagggggtacaagaaaggcccacaaatcagag
aaagctttccagcagtcagttgaacaagacaacttattcgatattactactgaagaagaa
tccaccaaacggaaaaagagccagaaagggccagcaaagacgaaaaagttgaaaatcgaa
aagagagaaaacatcaagcttgtaaaagagaagtttgaaatccttactgttgagactctc
tgtgaggggatgcggattttgggttgcgtgaaagaggtcagtgacctggaactggtgatt
agtctccccaatggcctcaagggttttgtgcaagtgactgagatctgtgatgcctacacc
aaaaagctgaacgagcaggtggcacaagaagaacctctgaaggatctggtccgcttgcct
gagcttttctcacctgggatgctggtgagatgtgtggtgagcagtgtgggcatcacggag
aagggcaaaaagagtgtcaagctgtctctgaaccccaggaatgtcaatggagtgctgagt
gctgaggccctgaagcctggcatgctgctcacaggcactgtgtccagcctggaagaccat
ggctacttagtagacattggtgtaagtgggaacagagcttttctgccactgcagaaagcc
caggaggacacgcgacagaagaacaaaggtgctaaactgaaggtgggtcagtacctgaac
tgtgtcattgaagaggtgaaaagcagtggaggagttgttagtctgtctgttggtcattca
gaagtttctaccgccattgctactgaggagcaaaactggacccttaataacttgctacca
gggctggtggtcaaaggccaagtgcagaaggtgactccatttggccttacagtaaacttc
ctctcatacttcacgggcctggttgactttatgcatctggagcccaagaaaactggaacg
tatttctcaaaccaagcagtaagggcttgcatcctcttcatccatcctcggaccagagct
gtgcggttgagcctgcgccctgtcttcctacagcctgggcgcccactcacccggctctcc
tgccagcaccttggagctgtgctggatgaccttcccgtccatggcttttttaacaaggct
ggggccaccttcaagctgaaggatggggctctggcttatgctcggtttagccatctctcc
aattctaagaacgtcttcaaacctgagatctttaagcctgggaacactcacaagtgtaga
atcattgactacagcccaatggatgaactggccttgctttctctgcggacatccatcatt
gaagctcagtaccttagctatcatgacaccaaaccaggagcagtggtaaagggcacagtg
ctgaccataaagccttatgggatgctggtgaaggtgggcgagcaaatcaggggcctggta
cctcccatgcatctggccgacatcctgatgaagaatccagaaaagaagtacagcgttggg
gatgaggtcaagtgccgggttttggtttgtgatcctgaagccaagaaattgatgatgacc
ctgaagaaaaccctggttgagtccagactgcctgccattacctgctatgcagatgccaag
cctggtctgcagacacatggcttcatcctgagggtcaaggactgtggctgcattgtgaag
ttctacaacgatgtgcagggactggtgcccaagcatgagctgagtgccgagtatatccct
gccccggagacagtcttttaccctgggcaggtaatgaaggttgtggtgctgaattgtgag
ccagccaaagagaggatgctcttatccttcaagctgttgagtgatccagaagcaaagaaa
gaacgtgagggaggaagtcagaagaaaagaagagctgttcatgttgggcagttggtggat
gtgaaggttgtagagaagactgaagacgggctggaggtggctgtcctgccccacagcatc
cctggtttcctccccatacctcacctgtcagaccacgtccccaatggcccactgctgtac
cactggctccaggcgggtgacaccctccacagggtcctgtgtctgcagagcgagggccgt
gttctcctttgcaggaagccagcgttggtctctgcagtagaaggtggtcaggatcccaag
agcttctcagaaatccatcctggaatgttgctcatggggtttgtgaagagcatcaaggac
tatggagtgttcgtccagttcccctcaggtcttagtggactggcccccaaagctgccatg
agtgacaaatttgtgacctccacaagtgaccactttgtcgaggggcagacggtagttgca
aaggtgacgaacgtggacgaggagaagcagcgaatgctgctgtcgttacggctgtcagac
tgcaccctgggggacgtggctaccaccagccttctcctcctgagccagtgcctggaggag
ctgcagggtgtgcgcagcctcatgagcaaccgagactctgtgttgatccagacactggcc
gagatgaccccaggaatgatccttgacctagaggtgcaggaagtgttggaagatggctct
gtggtattcggtgggggcccagtgccaggcctggtcctgagagccagcagatatcatcgg
gcagggcaggaggtggaatctgggcagaaaaagaaggctgtagtcttaaatgttgatatg
ttgaagttggaagtacatgtttccctttgccaagatttggtgaacagaaaacataaaaag
ctgaagaaaggcagtgagtaccaggcaactgtgcagcacttggaggagtcctttgccatt
gcctccttggtagagaccggccagctggcagctttctccctgacttctcacctcaacgac
accttccgctttgactcagagaagttgcaggtgggacagggtgtctctctagccctcaag
gccacacaaccaggagtgactggtcttattttagctgtcgagggaccagctgctaagagg
accatgagacagacccggaaggagtctgagacagtggatgaagatgaggaatcggatcca
gctctggttgttggaactgtaaagaagcacaccctgtccattggggacatggtcacagga
actgtcaagtccattaaggccacccatgtagttgtgaccctggaagatggtgtcattggc
tgtatccatgcctccaacattctagatgatgttccagtgggcacctctcccactagcaag
ctgaaagttgggaagacagtcactgcacgggtgatcggagggcgagacgtgaagacatac
aagtttctcccaataagtcaccccagatttattcgaaccatcccagagctgagtgttcga
ccaagtgagctggagaaggatggccacactgctctcaacactcactctgttagcccctcg
gagaagattaaacagtaccaggctggccagactgtgacttgcttcttgaagaggtacaac
gtggttaagaaatggcttgaagtggagattgctccagacatccgagggagaattcccttg
ttgctcacttctcttagtttcaaggttctgaaacatccagataagaagttccggatcggc
caggccctaaacgcaaccgtggttggtccagattcctgcaaggccttcttgtgtctatca
ctcataggtcctcacaaacttgagaaaggggaagtggccatgggccgagtggtgaaggtg
actcccaatgaggggctgactgtttccttcccctttgggaagtttggaagagcgagtata
tttcatgtgagtgactcttactctgagacacccctggaagactttgtcccccaaaagatt
gtcaggtgttgtgtcctgtccactgcaggccatgtgttgactttgtcgctgagatcgtcc
agaacaaacccagagacgaaaagcaaaatagaggatcctgagattaactccatccaggac
attgaggaggggcagctcctacggggctatgtgaaggccgtcgagccacacggtgtgctc
ttcagtcttggcccctcggttgtgggtttggcccggtactcccatgtttcccagtacagc
ccgtctaagaaagccctttatagcagatacctcccggaagggaagctgctcacagccaag
atcctaagcctgaaccacaagagaagcctggtgaggctgtcgttcctccccagtgacact
gggaagccagacgtccttcctgcctccataggactgccacttctggagcaggaggagagg
gaaacagagacagagagggaagaccaaaaagggaatgaggtgaagaagaaccagaaaagg
aaagagaagaaccagaaagggcaggaggaggtgaagtggctcagcgaggagaagagtgag
ccccggcagccacaagtgaagaagcagggcaagcgggggcgcctggagtctggaagcgag
caggaaagagtgaagaagaagcaaaagaaagctggtccatcagaggaggatgacagtggt
gttgaagtatattaccgggaaggagaagaggagatagaagagatgactgtgctgcccaag
gagaagccggccaagctgacagaggtgccccggctgcagctgtcttcaggcttcatgtgg
gacgtggggctagactctctcactccggccctgccacctcgaagagagagctcagacagc
gaggaggacgagaagccacatgaagccacgaagaagaaaaacaagaaggaaaaggcgttg
gagaagcagaaggcagagaaagagctgtcccgcattgaggaggccctaatggaccccagg
aggcagccggagtcagcagatgactttgaccgactcgtgctcagctcccccaacagctcc
atcctgtggctacagtacatggccttccacctgcaggccacagagatcgagaaggcccgt
gccgtggccgagcgggctctcaagaccatctccttcagagaggagcaggagaagctgaac
gtgtgggtggctctgctgaacctagagaacatgtacggctctcaggagtcactgaccaag
gtctttgagcgggcggtgcagtacaatgagcctctcaaggtctttttgcacctggctgac
atctacaccaagtcagagaaattccaggaagctggtgaactttacaaccggatgctgaag
cgtttccgtcaggagaaagccgtctggatcaagtacggctccttccttctgggaaggggc
caggctggtgccagtcaccgcgtgttgcagcgagcccttgagtgcttgcctcagaaggag
cacgtggatgtgattgccaggtttgcccagcttgagttccagctgggggataaggagcgg
gctaaggccattttcgagaacacactgagcacctacccaaagcgcacagatgtgtggtcg
gtgtacatcgatatgaccatcaagcatggcacccagaaggaagtccgggacatctttgag
cgggtcattcacctgagcctggcacccaagcgaatgaaattcttcttcaagcgctacctg
gactatgagaagcagcacggcactgagaaggacgtgcaggcagtgaaggcaaaggccctg
gaatacgtggaagctaagagctcagtgttggaggactag

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