Loxodonta africana (African savanna elephant): 104845836
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Entry
104845836 CDS
T04351
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
104845836 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lav00536
]
104845836 (COL13A1)
Glycosaminoglycan binding proteins [BR:
lav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104845836 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104845836
NCBI-ProteinID:
XP_023402952
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MVAERASKASTAGARGSGEPGAPGTVALAAAPAERCARLPSPGSFGLLALALCSLALSLL
AHFRTAELQARVLRLEAESGEQQMETAILGRVNQLLDEKWKLHSRRRRDTPNTSTGCNCP
PGPPGSTGRPGLPGDKGAIGMPGRVGIKGQAGEKGAPGDAGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGHPGPKGEMGLMGPRGQPGPQGQKGEKGQCGEYPHREHLSSTVSALRS
NQIITLKVCRLRMSSGPLSAERPPGHEAQRCTPRALAVAGGLLPLLNSVRLAPPSVIKRR
TFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRK
GERGMPGMPGKHGAKGAPGITVAGMKGEPGTPGAKGEKGDAGNAIGGGRGEPGPPGLPGP
PGSKGEAGVDGQAGPPGRQGDKGEPGTAGEQGPAGPKGSKGEPGKGEMVDYNGNINEALQ
EIRTLALMGPPGLPGQMGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG
PPGKDGPPGMKGEDGRTGSPGEKGEKGETGQAGSPGLDGPTGEKGEPGDQGRPGATGLPG
PSGLPGFTGEKGEPGEKGDPGMEVPGPPGPEGPPGPLGLQGVPGPKGEAGLAGAKGEKGV
QGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGS
RGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgagcgcgccagcaaagcgtcaaccgccggcgcccgcggctctggtgagccg
ggcgcgcccgggacggtggcgctggcggcggcgccggccgagcgctgcgctcggctgccg
agcccggggtcgttcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
gcccactttcggacggcggagctgcaggcccgggtactgcgcctagaagcggagagcggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactcgcggcgtcgccgggacacccccaacacgtctacagggtgtaactgccca
ccaggacctcctggttccactggaagacctgggctcccgggagataaaggtgccattggg
atgcccggacgtgtgggaataaagggccaagcaggcgagaagggtgccccaggagacgct
gggatgtccatcattggtccaagaggcccccccggccagccgggtacacgaggttttcct
ggatttccgggtcccattgggttagacggcaaaccgggccacccaggacctaaaggggag
atgggtctgatgggcccccgaggacagccgggacctcaaggacaaaaaggagaaaagggt
caatgtggagagtacccacatcgggagcacctaagcagcactgtctcagctctgcgctcc
aaccagataattaccctgaaggtttgtaggctccggatgagctctgggcccctctctgcc
gagaggcctcctggacacgaagcccagcgttgcacacctcgggccctggcggtggcgggt
gggctgctgcctctcctcaattcagtgcggctggctccgccctcagtcataaaaaggcgg
accttccagggtgaacagggccaggctggcatccaaggcccaccaggaccaccaggcccc
cctggaccaagtggacctctggggcacccaggactgccagggcccatggggccacccggc
ttacctgggcctcctggaccaaagggagaccctgggatccaaggctatcacggccggaag
ggagagcggggcatgccggggatgccgggcaaacatggagcgaagggggctcctggtatc
actgtggctgggatgaagggtgagccagggaccccaggagccaagggagagaaaggtgac
gctggcaacgccattggagggggccgaggggagcctggccccccagggctccctgggccc
ccggggtcaaagggagaagctggtgttgatgggcaggctggtcccccaggacggcaagga
gacaagggggagcctggaacagctggagaacagggaccagctggccccaagggctccaag
ggagaaccagggaagggggagatggtggattacaatggaaacatcaacgaggctctccag
gagatccgaacgctggccttgatgggcccccctgggcttcccgggcaaatgggcccacct
ggagctccagggattccaggccagaagggggagattggactgccaggccctccaggacac
gatggggaaaagggacctcgaggcaaaccaggagacatgggccctcctggcccacaagga
cccccaggaaaggatgggcctccaggaatgaagggagaagatggacgaacaggaagccca
ggagaaaagggggagaaaggggagactggacaagcaggctccccgggtctagacggccca
actggggagaaaggagaaccaggtgaccaagggagacccggagcgacaggattgcctggc
cccagtgggctcccgggatttacaggagagaaaggagaacctggagagaagggtgaccca
ggcatggaggttcctgggccaccagggccagagggccctcctggacctctgggtctccaa
ggtgttcctggaccaaagggagaagcaggactagctggagcaaaaggagagaagggtgtc
cagggagaaaaaggagaccgaggtcctctgggattgcccggtactccaggaccaattgga
gttccaggccccgcaggaccaaagggtgagaggggcagcaaaggtgaccctgggatgaca
ggaccaacgggggcagctgggcttcctggtttacacggaccacccggggacaaaggaagc
cggggggaaagggggaagaaaggctctagagggcctaaaggggataagggagaccaagga
gcgcctggattagatgccccctgcccactgggtgaagatggtctaccagtccaaggctgc
tggaacaagtga
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