Novilysobacter avium: INQ42_00930
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Entry
INQ42_00930 CDS
T08144
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lavi
Novilysobacter avium
Pathway
lavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ42_00930 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lavi03021
]
INQ42_00930 (rho)
03019 Messenger RNA biogenesis [BR:
lavi03019
]
INQ42_00930 (rho)
Transcription machinery [BR:
lavi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
INQ42_00930 (rho)
Messenger RNA biogenesis [BR:
lavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
INQ42_00930 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
OB_RNB
AAA
S1CSD-TOTE-2
AAA_25
ResIII
AAA_22
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
QOW22221
UniProt:
A0A7S6UKZ7
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All DBs
Position
complement(208351..210240)
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AA seq
629 aa
AA seq
DB search
MSENTPDAGDIAEKRVRKTRVSKTTAAKADSPQSDKPVAPAAKPEVAKPAPAAPAAPASA
PTAPKSDAAPAAQADKPAPKPAAKPESAAPSGDTTPASKPRDAAPAAAHASGGGDAARQD
SGEQHGKGQENGGSGGDGNPRPPRDGQHRDQDGGRSNNRRERFRSKRERGGGGGGGGGRG
GSRDGLPSDDGGNEPFIPRSNPQVPEGFPTYSLGDLKRMPAHKLLEIAEQLNISEGVARA
RKQDVIFAVLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRF
NLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRRKFHLER
GDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQIATAISHNHPDVHMIVLLI
DERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITR
LARAYNNVLPSSGKVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDE
VIYEEFKGTGNSEVHLSRRIAEKRVYPAIDINRSGTRREDYLIEPELLQKIWILRKLLHG
MDEIGAMEFLLDKMKSSKSNDEFFSSMKR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaaaacacccccgacgccggcgacatcgccgaaaagcgcgtgcgcaagacgcgc
gtgagcaaaaccacggccgccaaggccgattcgccgcagagcgataagccggtggcgccg
gccgccaagcccgaggtcgcgaaacccgcgcctgcggccccggccgctcccgcgtccgcg
ccgaccgcacccaagtccgacgcggcccccgccgcgcaggcagacaaaccggctcccaag
cccgcggcgaagccggaatcggcggcgccaagcggtgacaccacgccggccagcaagccc
agggatgcggcccccgctgcggcacacgcctccggcggcggcgatgctgcccgccaggac
agcggcgagcagcacggcaagggccaggagaacggcggttccggcggcgacggcaacccg
cgcccgccccgtgacggccagcaccgtgaccaggacggcggccgcagcaacaaccgccgc
gaacggttccgcagcaagcgcgagcgcggcggtgggggtggtggcggcggtggcaggggc
ggctcgcgcgatggcctgcccagcgacgacggcggcaacgagccgttcattcctcgctcc
aacccgcaggtgcccgagggcttccccacctattcgctgggcgacctcaagcgcatgccg
gcgcacaagttgctggaaatcgccgagcagctgaacatctccgaaggtgtcgcccgcgcc
cgcaagcaggacgtcatcttcgccgtgctcaaggtgctcacgcgccacggcgagggcgtc
gccgccgatggcgtgctggagatcctgcccgacgggttcggtttcctgcgagccgccgaa
gcctcttatctggccggccccgacgatacctacatctcgcccagccagatccgccgcttc
aacctgcgcaccggcgaccatctatcgggccggatccggttcccgaaggacggtgagcgc
tatttcgccctctcgatcgtggacacgatcaacggcgagccgctggaagcgtccaagaac
aaggtcctgttcgagaacctgacggcgctgttcccgcgccgcaagttccacctggagcgc
ggcgacggttccaccgaggacatcaccggccggatcctcgacctgatggccccgcagggc
aagggccagcgcgccctgatcgtcagcccgcccaaggccggcaagacgatgatgatgcag
cagatcgccaccgcgatcagccacaaccatcccgacgtgcacatgatcgtgctgctgatc
gatgagcggcccgaggaagttaccgagatgcagcgcaccgtgcgcggcgaggtcatctcc
tcgaccttcgacgagccggcggcgcgccacgtgcaggtcgccgagatggtgatcgagcgg
gccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctcgactccatcacccgt
ctggcccgtgcgtacaacaacgtcctgcccagctcgggcaaggtgctgtccggcggcgtc
gacgccaacgccctgcaccgcccgaagcggttcttcggcgcggcgcgcaacgtcgaggaa
ggcggcagcctgacgatcatcgccaccgcgctggtcgataccggcagcaagatggacgag
gtgatttacgaggagttcaagggcaccggcaactccgaggtgcacctgagccgccgcatc
gccgagaagcgcgtgtaccccgcgatcgacatcaaccgctccggcacccgccgcgaggat
tatctgatcgagcccgagctgctgcagaagatctggattctgcgcaagctgctgcacggc
atggacgagatcggcgcgatggagttcctgctcgacaagatgaagagctccaagtccaac
gacgagttcttctcctcgatgaagcgctga
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