Novilysobacter avium: INQ42_01130
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Entry
INQ42_01130 CDS
T08144
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lavi
Novilysobacter avium
Pathway
lavi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
INQ42_01130 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lavi03021
]
INQ42_01130 (rpoD)
Transcription machinery [BR:
lavi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
INQ42_01130 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
FCD
MtaB
Motif
Other DBs
NCBI-ProteinID:
QOW22254
LinkDB
All DBs
Position
253417..255294
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AA seq
625 aa
AA seq
DB search
MANESPAPKSDIKSLISKGLEQGYLTYAEVNDHLPADMVEAEQIEDVIALINGMGIEVHE
VAPDADTLSIGDTSSSGREVDETTAEEAAAALTGLDAEGGRTTDPVRMYMREMGTVDLLT
REGEIEIAKRIEDGLNQVQASIALFPSTIQLILEDYELHKAGKKRLAELLVGFLDQLEDP
TVAPPPAEAMSAVPEPVKEEDEVDEDAEEDDDEEVVDEGPTGPDPAEVTARFEHLSDLYT
QFEKAYAKHGPSHKSVVKLREEMAEVFVTLKLPLPLTDVLVQNMRSTQAELRRQERRILE
LATRVAKMPRKDFIRSWDGNQTNLEWVDDLLKRKQKWASGLREVKDQIIAEQEATIATEA
AMRITLADLREISRTMAYGETRARKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQYGREATPEELAKEMEMPEDKVRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPVDATVNINLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLEIE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgagagtccggctcccaagtccgatatcaaatcgctgatcagtaagggcctg
gagcaaggctacctgacgtatgcggaagtcaacgatcacctgccggccgacatggtcgag
gcggagcagatcgaggacgtcatcgccctgatcaatggcatgggcatcgaagtgcacgaa
gtcgcgcccgatgccgacaccctgtcgatcggcgacaccagctccagcgggcgtgaggtt
gatgagaccaccgccgaggaagccgctgccgccctgaccggcctggatgccgagggtggc
cgcacgaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgacctgctgacc
cgcgaaggcgagatcgagatcgccaagcgcatcgaggacggcctcaaccaggtccaggca
tccatcgcgctgttccccagcaccatccagctgatcctggaagactacgaactgcacaag
gccggcaagaagcgcctggccgagctgttggtcggtttccttgaccagcttgaagacccg
accgtggcgccgccgccggccgaggccatgtcggccgtgcccgagccggtcaaggaagag
gacgaagtcgacgaggacgccgaggaggacgacgacgaggaagtcgtcgacgagggcccg
accggtcccgatccggccgaggtgaccgcacgcttcgagcacctcagcgacctctacacg
cagttcgagaaggcctacgccaagcacggccccagccacaagtcggtggtcaagctgcgc
gaggagatggccgaggtgttcgtcaccctgaagctgccgctgccgctgaccgacgtgctg
gtgcagaacatgcgcagcacccaggccgaactgcgccgccaggagcgccgcatcctcgag
ctggcgacccgtgtggcgaaaatgccgcgcaaggacttcatccgctcgtgggacggcaac
cagaccaacctggagtgggtcgatgacctgctcaagcgcaagcagaagtgggcttcgggc
ctgcgcgaggtgaaggaccagatcattgccgagcaggaggcgaccatcgccaccgaggcc
gcgatgcgcatcaccctggccgacctgcgcgagatcagccgcaccatggcctacggcgag
acgcgtgcgcgcaaggccaagcgcgagatgatcgaggccaacctgcggctggtgatctcg
atcgccaagaagtacaccaaccgtggactgcagttcctggacctgatccaggagggcaac
atcggcctgatgaaggccgtcgacaagttcgagcatcgccgcggcttcaagttctcgacc
tacgccacttggtggatccgccaggccatcacccgctcgatcgccgaccaggcgcgcacc
atccgcatcccggtgcacatgatcgagacgatcaacaagctcaaccgcatctcgcgccag
atgctgcagcaatacggccgtgaagccacgcccgaagagctggccaaggaaatggagatg
cccgaggacaaggttcgcaaggtgatgaagatcgccaaggaaccgatctccatggaaacc
ccgatcggcgatgacgaggactcccacctgggcgatttcatcgaggacaccaacgtggag
tcccccgtggatgcgacggtcaacatcaacctgatggagactgtgcgcgacgtcctggcc
gggctgaccccgcgcgaggccaaggtgctgcgcatgcgcttcggcatcgacatgaacacc
gaccacacccttgaggaagtcggcaaacagttcgacgtcacccgcgagcggatccgccag
atagaggccaaggcgctgcgaaagctgcgtcacccgagccgctcggagcaactgcgcagc
ttcctcgagatcgagtaa
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