Novilysobacter avium: INQ42_02530
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Entry
INQ42_02530 CDS
T08144
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INQ42_02530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lavi03021
]
INQ42_02530 (rpoC)
03400 DNA repair and recombination proteins [BR:
lavi03400
]
INQ42_02530 (rpoC)
Enzymes [BR:
lavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INQ42_02530 (rpoC)
Transcription machinery [BR:
lavi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INQ42_02530 (rpoC)
DNA repair and recombination proteins [BR:
lavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INQ42_02530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QOW22494
LinkDB
All DBs
Position
566162..570376
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRPALNFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPFERGQLLNEEEYMQARQEHNDDFDAAM
GAEAVFDLLRTLDLQSELVQLREDMAATGSETKLKRYTKRVKLIEAFLESGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPEIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIFAKLQRQGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANVAEVKRAYDNR
VVELHAKVKVRIEESVIQEDGSRVQQSSIVDTTIGRALLDDILPSGLPFALANVELTKKN
ISRLINSCYRMLGLKDTVVFADQLMYTGFAFATRAGVSIGIDDMIIPDAKKGILDEAETE
VTEIQEQYQSGLVTGGERYNKVVDIWSRTNERVAKAMMETIGTEKVVNAKGETIDQKSMN
SVFIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTLEGLTMIPIVEGGDIVEPLRDRVL
GRVVAEDVFLPGDDEDPIVTRNTLLDEAWVQKLEEASVQLIKVRSTITCESTFGVCANCY
GRDLGRGHMVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGTLK
FNNLKHIEHSDGHVVAVSRSGELSVLDVHGRERERYKLPYGATIDVKDGAEIKAGQQVAH
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDELTGLASREITDPKRRGSAAKELRPIVR
IIDKDGNDLNIPGTDLPAQYQLPPRSVVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAEVSGIVSFGKETKGKQRLVIKEADGTDYEELIPKYRQIIVFE
GEHVEKGETVVDGEPTPQDILRLLGVEPLAVYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVDISDAGDSKFMNGEQIERQRFVEEHARVAANDGIVPQFNPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAQRRKNASGLTDSE
MAALSAPVASAAVAEDVGEESSAS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctgttcaaccagcagcgtccggcgctgaacttcgacgcgatc
aagatcgcgttggcgtcgcccgacctgatccgttcgtggtcgtttggcgaggtaaagaag
cccgaaacgatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccgcg
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcaccgaggtcaccctggccaaggtccgtcgcgag
cgcatgggacacatcgacctggcctcgccggtcgcccacatctggttcctcaagtcgctg
cccagccgcatcggcctgatgctggacatgaccctgcgcgatatcgagcgcatcctctac
ttcgaggcgttcgtcgtcaccgagccgggcctgaccccgttcgagcgcggccagctgctc
aatgaagaggagtacatgcaggcccgccaggagcacaacgacgacttcgacgccgcgatg
ggcgccgaggcggtgttcgacctgttgcggaccctggacctgcagagcgagctggtccag
ctgcgcgaggacatggccgccaccggttcggagaccaagctcaagcgctacaccaagcgc
gtcaagctgatcgaggcgttcctggagtcgggcaacaagcccgagtggatggtcatgacc
gtccttcccgtcctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttt
gcgacctccgacctgaacgacctgtaccgtcgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggagctcagcgcgccggagatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtggatgcgctgatggacaacggccgtcgtggccgcgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctgggcaagcgcgtggactactccggccgctcggtcatcgtggtcggtccgtac
ctcaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaagccgttc
atcttcgccaagctgcagcgccagggcctggccaccaccatcaaggcggccaagaagctg
gtcgagcgcgaagaggcggaagtctgggacatcctggaagaagtcatccgagagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgcctcggcatccaggcgttcgagccggtc
ctgatcgagggcaaggcgatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatggcctccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggcctgtactacatgacccgcgcgctggagaacaag
aaaggcgagggcatggcgtttgccaacgtcgccgaggtcaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcgaggagtcggtgatccaggaggac
ggcagccgtgtgcagcagtcctcgatcgtcgacaccacgatcgggcgcgcgttgctggac
gacatcctgccgtccggcctgccgtttgcgctggccaacgtcgagctgaccaagaagaac
atcagccgcctgatcaactcgtgctaccgcatgctgggcctgaaggacacggtagtgttc
gccgaccagctgatgtacaccggtttcgccttcgcgacccgcgccggcgtgtccatcggc
atcgacgacatgatcatcccggacgccaagaagggcatcctggacgaggccgagaccgag
gtcaccgagatccaggagcagtaccagtccggcctggtcaccggcggcgagcggtacaac
aaggtcgtggatatctggtcgcgcaccaacgagcgcgtcgccaaggcgatgatggaaacc
atcggcaccgagaaggtggtcaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcggtcttcatcatggccgactcgggtgcgcgtggttcgcaggcgcagatccgccagctg
gccggcatgcgtggcctgatggccaagccggatggctcgatcatcgagaccccgatcacc
gcgaacttccgtgaaggcctcaacgtcctgcagtacttcatctcgacccacggcgcgcgc
aagggcctggccgataccgcgttgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacgtggtcatcaccgaggacgattgcggcacgctggaaggcctc
accatgatcccgatcgtggaaggcggcgacatcgtggagccgctgcgcgaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcgatgacgaggatccgatcgtcacc
cggaacaccctgctcgacgaggcctgggtgcagaagctggaagaggcgagcgtgcagctg
atcaaggtccgctcgaccatcacctgcgagtccacgttcggggtgtgcgccaactgctac
gggcgtgacctgggccgcggccacatggtcaaccatggcgaggcggtcggcgtggtcgct
gcccagtccatcggtgagccgggtacccagctgaccatgcgcacgttccacatcggtggc
gcggcgtcgcgagcggcggccatcgacaacgtcacggtgaagaccaccggtacgctgaag
ttcaacaacctcaagcacatcgagcactccgacggccacgtggtcgcggtgtcccgctcc
ggtgaactctccgtgctcgacgtccacgggcgtgagcgcgagcgttacaagctgccctac
ggtgcgaccatcgacgtcaaggatggcgcggagatcaaggccggccagcaggtcgcccat
tgggacccgcataaccatccgatcgtctcggaagtcgccggtttcgtgcgcttcatcgac
tttgtcgatggcgtgaccgtgatcgagaagaccgacgagctgaccggtctggcctcgcgc
gagatcaccgatcccaagcgtcgtggttcggcggccaaggaactgcgcccgatcgtgcgc
atcatcgacaaggacggcaacgacctcaacatcccgggtaccgacctgccggcgcagtac
cagctgccaccgcgctcggtggtcaacctgcaggatggcgcggcggtgggcgttggcgac
gtggttgccaagatcccccaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaggcgcgcaagcccaaggacccggcgatcctggccgaggtg
tcgggcatcgtcagcttcggcaaggaaaccaagggcaagcagcgtctggtgatcaaggaa
gccgacggcaccgattacgaggagctgatccccaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgagccgaccccgcaggacatc
cttcgcctgttgggcgtggagccactggcggtgtacctgaccaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgatatcagcgacgccggcgacagcaagttcatgaatggcgagcagatc
gagcgtcagcgctttgtcgaagagcatgcacgcgtcgcggcgaacgacggcatcgtgccg
cagttcaacccggtcctgctgggcatcaccaaggcctcactggcgacggagtcgttcatc
tccgcggcctcgttccaggagaccacccgggtgctcaccgaggccgctgtccgcggtacc
cgtgacaacctgcgcggactcaaggagaacgtcatcgtcggtcgcctgattcctgccggc
accggattggcgtaccatgcgcagcgccgcaagaacgcgtcgggtctgaccgactccgaa
atggcggccctgtcggcgccggtggcgtccgctgcggtggcagaggatgtcggcgaagag
tcgagcgcgtcgtaa
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