Novilysobacter avium: INQ42_03970
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Entry
INQ42_03970 CDS
T08144
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lavi
Novilysobacter avium
Pathway
lavi02020
Two-component system
lavi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
INQ42_03970
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
INQ42_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lavi03021
]
INQ42_03970
Transcription machinery [BR:
lavi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
INQ42_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
HTH_Crp_2
HTH_23
HTH_38
MarR_2
HTH_3
Sigma70_r4_2
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QOW22750
LinkDB
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Position
complement(878592..880028)
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AA seq
478 aa
AA seq
DB search
MKPQLQTSLGQSLVMTPQLQQAIRLLQMSSAELEAELAAAVESNPLLDWTEHTTDAAIPD
PAGGDDASGDKAAVHENDTPAPPEADWGPDDGEVWYQRVGPADPDSERDPAEQVAESESL
QDYLLWQLHLSHLSPRDRQIAVVLIESMDEAGYFRESPESVAATLAPELIVDEEEVLTVL
HQIQRFDPIGVGARDLAECLSLQLRQLDECIPGRELALTLVRDHLERLPRMGAAGLATEM
KLAVSEVETAVDLLRSLEPRPGAGIGDIAEDTYVAPDVVIWRQHGMWRVALSESMRPRIG
IHRGYENMIRHADSADANYLKGHLQEARWLLKSLEARGVTMLKVARCLISQQAGFLEFGN
AALRPLTLREVAAEIGMHESTVSRAIARKYARTPRGTIPLRAFFASGIDTGSGGEASSIA
IQSMIRELIQAENPRKPLSDARLAETLKAAGIPVARRTVAKYREAMGIVSSQDRVRMA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccaactgcagacatcactcggccagagccttgtcatgacaccccagctgcag
caggccatccggctgctgcagatgtcttcggctgaactcgaggcggaactggcggctgcg
gtcgagtccaacccgctgctggactggaccgaacacaccacggatgccgcgatcccggat
ccggccggcggtgacgatgcatctggcgacaaggcagcggtccacgaaaacgacaccccg
gcgccccccgaggcggattggggccccgacgacggcgaggtctggtatcagcgcgtcggc
ccggccgatcccgacagcgagcgtgacccggccgagcaggtggccgagtcggaaagcctg
caggattacctgttgtggcagctgcacctgagccacctgtcaccgcgcgaccgccagatc
gcggtggtgctgatcgagtccatggacgaggccgggtatttccgggaatcgccggagtcg
gtcgctgcgacccttgcgcccgagttgatcgtagacgaggaagaagtcctcacggtgctg
caccagatccagcgtttcgacccgatcggcgtcggtgcacgcgacctcgccgaatgcctc
agcctgcaactgcggcagctcgacgaatgcatcccggggcgcgagctggccctcaccctg
gtgcgcgatcacctcgagcggctgccgcggatgggcgctgcgggtctggcgaccgagatg
aagctggccgtgagcgaggtggaaacggccgtcgatttgctgcgttcgctggagccgcgt
ccgggcgcggggatcggcgatatcgccgaggacacctacgtcgctcccgacgtcgtgatc
tggcgccagcacggcatgtggcgggtggccctttccgagagcatgcggccacgcatcggc
atccatcgcggctacgagaacatgatccgccacgccgactccgccgacgccaactacctc
aaggggcaccttcaggaagcgcgctggttgctcaagagcctggaggcacgcggggtgacg
atgctgaaagtcgcccgctgcctgatcagccagcaggccggcttcctggagttcggcaac
gcggcgctgcgtccgctgacattgcgtgaggtggcagccgagatcggcatgcacgaatcg
acggtgtcgcgcgccatcgcgcgcaagtacgcccgcacaccacgcggcaccatcccgctg
cgcgcgttctttgcctccggcattgacaccggcagcggtggcgaggcgtcgagcatcgcc
atccagtcgatgatccgcgagttgatccaggccgagaacccgcgcaagccgctgtcggat
gcgcgcctggccgaaacgctcaaggccgccggcatcccggttgcccgccgcaccgtagcc
aagtaccgcgaggcgatggggatcgtgtcctcccaggaccgggtgcgcatggcctga
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