Novilysobacter avium: INQ42_04200
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Entry
INQ42_04200 CDS
T08144
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
lavi
Novilysobacter avium
Pathway
lavi00521
Streptomycin biosynthesis
lavi00523
Polyketide sugar unit biosynthesis
lavi00525
Acarbose and validamycin biosynthesis
lavi00541
Biosynthesis of various nucleotide sugars
lavi01100
Metabolic pathways
lavi01110
Biosynthesis of secondary metabolites
lavi01250
Biosynthesis of nucleotide sugars
Module
lavi_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
INQ42_04200 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
INQ42_04200 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
INQ42_04200 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
INQ42_04200 (rfbB)
00525 Acarbose and validamycin biosynthesis
INQ42_04200 (rfbB)
Enzymes [BR:
lavi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
INQ42_04200 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
QOW22786
UniProt:
A0A7S6UM75
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All DBs
Position
924873..925928
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AA seq
351 aa
AA seq
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MPTWLVTGGAGFIGGNFVLDAVQRGIKVVNLDALTYAGNLDTLSSLDGNPSHVFVHGDIG
DAALVARLLREHQPDAVINFAAESHVDRSIDGPAEFVQTNVVGTLSLLEQVRDYWKSLDG
SRAADFRFLHVSTDEVYGTLGDTGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV
LTTNCSNNYGPYQFPEKLIPLIIAKALAGEPLPIYGDGLNVRDWLFVSDHCAAIRRVLEA
GRVGEVYNVGGEAERTNIVVVQTICRLLDQRRPLADGRKRESLITYVQDRPGHDRRYAID
ASKLHGELAWEPAITFDEGMARTVDWYLDNAPWVQRVMDGSYRLERIGGVA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgtggttggtgaccggcggggccggttttattggcggaaatttcgtccttgat
gcggttcagcgggggatcaaggtggtcaaccttgacgccctgacctacgcgggcaacctg
gacaccctgtcatcgctggatggcaatccgtcgcacgtgttcgtccacggcgacatcggc
gacgccgcactcgtggctcggctgttgcgcgagcaccagcccgacgcggtgatcaatttc
gccgccgagagccatgtggatcgctccatcgatggccccgccgagttcgtccagaccaac
gtggtgggcacgctcagcctgctggagcaggtccgcgactactggaagtcgctggacggc
tcgcgcgcggcggatttccgcttcctgcacgtctccaccgacgaggtctacggcaccttg
ggggatacggggaagttcaccgaaaccacgccgtacgcgcccaactcgccgtactccgct
tccaaggcggcgtccgaccacctggtgcgtgcgttccaccacacctacggcctgccggta
ctcaccaccaactgctccaacaactacgggccttaccagttcccggagaagctcattccg
ctgatcatcgccaaggcgctggccggcgagccgctgccgatctacggcgatggcctcaac
gtgcgcgactggctgttcgtgtccgaccactgcgcggcgatccgacgtgtgctggaggca
ggtcgggtgggcgaggtttataacgtcggcggtgaggcggagcgcaccaacattgtcgtg
gtgcagacgatctgccggctgctcgaccagcgacggccgcttgccgacggccgcaagcgc
gaatcgctgatcacctacgtccaggaccgccccggccatgaccgccgctacgcgatcgat
gccagcaagctgcacggcgaactggcctgggagccggcgatcacctttgatgagggcatg
gcacggaccgttgactggtacctggacaacgcgccgtgggtgcagcgggtgatggacggc
agctaccggctcgagcgcatcggtggcgtggcgtga
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