KEGG   Novilysobacter avium: INQ42_04940
Entry
INQ42_04940       CDS       T08144                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
lavi  Novilysobacter avium
Brite
KEGG Orthology (KO) [BR:lavi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lavi03016]
    INQ42_04940 (rnd)
Enzymes [BR:lavi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     INQ42_04940 (rnd)
Transfer RNA biogenesis [BR:lavi03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    INQ42_04940 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C DUF7691 DUF742
Other DBs
NCBI-ProteinID: QOW23293
LinkDB
Position
complement(1075615..1076700)
AA seq 361 aa
MDSPEQLSASLAHGPRRIGVDTEFIRERTYWPKLALVQIALERDGQLEILLVDSLAPGIN
EALAAILADTTILKIMHSPSEDLVAFKHACDALPRPLFDTQLAASLTGVGGGMGYQKLVE
SITGVPLAKGETRSDWLRRPLSASQLEYAADDVRHLFELHDVLESMLQKQGRRDWLAADA
ERTLANADADGLERWPHLSLRGSQFLDPDAQRSAIRLLRWRDRYARETDRPRGWILDNEL
ALLVAREQPTGTAALQDLLDGHPKAPRKLTDIIWNALRTPVDDEADAPDARLAEKRDKTR
LRALQDAVAKLSVELDLPAGVLASRKHLESLLDHGEWPDALAGWRQEALEPVLTPLLEGK
H
NT seq 1086 nt   +upstreamnt  +downstreamnt
atcgactctcccgagcagctcagcgccagcctcgcccacggaccccggcgcatcggggtg
gacaccgaattcatccgcgaacgcacctattggccgaaactggcgctggtgcagatcgcg
ctggagcgcgacggacagctcgagatcctgctggtggacagcctggcgccgggcatcaat
gaagcgctcgcggcgatcctggccgatacgacgatcctgaagatcatgcacagccccagc
gaggacctggtcgccttcaagcacgcgtgtgatgcgctgccgcgcccgcttttcgatacc
cagctggcggcctcgctgaccggggtgggcggcggcatgggttaccagaagctggtggaa
agcatcaccggcgtgccgctggccaagggcgagacacgctcggactggctgcgccgaccg
ctgtcggcatcgcagctggaatacgccgccgacgacgtccgccatctgttcgaattgcac
gatgtgctggaaagcatgctgcagaagcagggccgccgcgactggctcgctgcggacgcg
gagcgcacgcttgccaacgcggatgccgacgggctggagcgttggccgcacctgtccctg
cgcggctcgcagttcctggatcccgatgcccaacgcagcgcgatccggctgttgcgctgg
cgcgaccgctacgcacgcgagaccgaccgcccgcggggctggatcctcgacaacgagctg
gccttgctggtcgcgcgggagcagcccaccggcactgcagcgctgcaggacttgctcgac
ggccatcccaaggcaccgcgcaaactgaccgacatcatatggaatgccttacgcacccct
gtcgacgacgaagcggacgcaccggatgcgcgactggcggagaagcgcgacaaaacacgc
ctgcgcgcgttgcaggacgccgtcgcgaagctcagtgtcgaactcgacctgccggccggc
gtgctcgcctcgcgcaagcacctggaaagcctgcttgaccacggcgagtggccagacgcg
cttgccggctggcggcaggaagcgctggagccggtgctgacgccattgctggaggggaaa
cactag

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