Novilysobacter avium: INQ42_05780
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Entry
INQ42_05780 CDS
T08144
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
INQ42_05780 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lavi03400
]
INQ42_05780 (recC)
Enzymes [BR:
lavi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
INQ42_05780 (recC)
DNA repair and recombination proteins [BR:
lavi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
INQ42_05780 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QOW23059
LinkDB
All DBs
Position
1273629..1277333
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AA seq
1234 aa
AA seq
DB search
MASVDKRGQLREVEGAAQTTGLVIYRASRLEMLLGPLRELLAVTRPANVLAPQTIIAAHP
GMKQWLNGALARAYGPGGIVANLDIQLPSTWIGNLAERQLGQQAVSLPRYQREHLRWNIH
ELLGRDLDAIGVTDVRIASYLQPADADARHAGADVARRRFQLADRLARIYSQYVVYRPDW
LNAWEHGRLDAVTGQGGDPRMASTEQRLLAPLWRHLRAQLGPHRGDVVATLIDRLLDRND
GGGDALHVFGVSHLAPSELAVIRAAARHRLVAMYVPDPCREYWGGLGNTVAEIQQRRDAE
LAGLESAGAGDYWIEQDNPLLASWGRMGQHFIMALADGSDDVLADVRHRADEEVSSPVNR
LQRVQESIRALAPLPEAVELRQPAVIECEIADASLRVHASHTRLRELEILRDQLLDAIES
TDQHGEPIRPADIVVMAPDIRSYVPLIPAVFGVAGHGGERLPYHLADVSVARSHSLFGAF
QRLLDLPGTRVTAPEVVDLLAIPEVAGRLGLDAGAVDELSGWLQTSRVAWALDPAFRSRF
GVPAIAEHTFGWSMDRMMAGYLMADRADIEHQPSVALPGGVAIAPLTGIHGPAAAHLGAL
DHLLREIQALCDLAEESRPPSAWAAELERRFEAMFRIDLMDADARDARAVLLGFIRTLAT
ETAKAEVDPELHFSVVRDLLVERLAAAPERQRFLMGGITFCGMVPQRAIPFKVVAVLGLN
DGEFPRNSSDAGLDLMARYRRLGDRDVRSDDRYLFLETLMSARERLHLSYLGEGVMDGKP
RNPAQPLSELLAVLDASAGLAADDTDTPRPWIIRHPLQPFDARYCDGSDPRLFSYQQEFA
AMHAQGVQPDVAPFLDRDGTREVVLEGPIALREVQAYYRDPAAQVLGRRMQISLDALVDD
RLPSEEPVDPRFGALDSVPRKLFFNDALPAWPDGQWPPERAPDWLRLGGIMPPGRPGVQA
WEDSAAAVAKLLERLADLPAFEHGVPAPVSVVIDQPIGDVALVGQVAHVYRLSHEGREHW
QMLRAFPGQGGALKAEKDLDFKDRVPMFMDWALLRLHTAGGGGRMPTVRLATLVDDEIPS
WSGALNAWDEAFVEAAPEERSQLLSDLQRRLSRLLHWWQQAQGRPRWYFPKTAWKAIQPT
VSPRSGAGGQDDREPAPANVESIWVATHDGGTGERDYAPGYSRLLAGGVDFAGGSNELAE
LHRFALALHECIDMASPLRRNATADESACMEKQQ
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtcagtcgacaagcgcggacagttgcgggaagtggagggggcggcgcagaccacc
ggtctggtgatctaccgtgccagccggctggaaatgctgctcggtccgctgcgcgagttg
ctggcggtgacccgcccggccaatgtgctcgccccgcagaccatcatcgccgcgcatccg
ggaatgaagcagtggctgaacggcgcgctggcccgcgcctacggaccgggcgggatcgtt
gccaacctcgacattcagctcccgagcacgtggatcggcaatctggcggagcggcagctg
ggccagcaggcggtgtcgctgccgcgttaccagcgcgagcacctgcgctggaacatccat
gaactgctcggccgcgacctggatgcaatcggcgtcaccgatgtgcgcatcgcgtcctac
ctccagccggcggacgccgacgcgcggcatgccggcgcggacgtggcgcggcgccggttt
cagctcgctgaccgcctggcgcgaatctattcccagtacgtggtctaccgacccgactgg
ctcaacgcctgggagcacggacgcctggacgcagtcaccggtcagggcggcgatccgcga
atggcgtccaccgagcagcggctgttggcgccgctttggcggcatctgcgcgcgcagctg
gggccgcaccgcggcgacgtcgtcgccaccctcatcgaccgactgctggaccgcaacgac
ggtggcggtgatgcgctgcatgtctttggtgtcagtcatctggcgccgtccgagctggcg
gtgatccgcgccgcggcccgccaccggctggtggcgatgtacgtccccgatccctgtcgt
gagtactggggtggcctgggcaacacggtggcggagatccagcagcggcgcgacgcggaa
ctggccgggctggaaagcgccggcgcgggcgattactggatcgagcaggacaatccgctg
ctggccagttggggccggatgggccagcacttcatcatggcgctggccgatggcagcgac
gacgtgctggccgacgtgcgccatcgggccgacgaggaggtctcgtcgccggtcaaccga
ctgcagcgcgtgcaggagagcatccgcgcgttggcgccgttgcccgaggcggtggagctc
cggcagccagcggtcatcgagtgtgagatcgccgacgcgtcgttgcgggttcatgccagc
cacacccgcctgcgtgagctcgaaatcctccgcgaccagctgctcgacgcgatagaaagc
acggaccagcacggcgagccgatccgtccggcggacatcgtagtgatggcgccggacatc
cgctcctatgtgccgctgattcccgccgtgttcggtgtcgccgggcacggcggggagcgc
ctgccgtaccacctggccgatgtttcggtggcgcgcagccactcgttgtttggtgcgttc
cagcgcctgctcgatctgcccggcacccgcgtcaccgcgcccgaggtggtggatctgctg
gccatccccgaggtcgccggtcgcctgggtctggatgctggcgcggtggacgagctgagc
ggctggttgcagacgagccgcgtggcgtgggcgctggacccggcattccgcagccgcttc
ggcgtgccggcgatcgccgagcacaccttcggctggtcgatggaccggatgatggccggc
tatctgatggcggaccgcgccgatatcgagcaccaaccatcggtcgccctgccgggcggc
gtcgccattgcgccgctgactggcatccacggcccggccgccgcccatctgggcgcgctg
gatcacctgttgcgcgagatccaggcgctttgtgatctcgccgaggaatcccgtccgccg
agcgcctgggcggcggagttggagcgccgattcgaggcgatgttccggatcgacctgatg
gacgccgacgcccgcgacgcaagggccgtgctgctgggtttcatccgcacgctggcgacg
gaaaccgcgaaagccgaggtcgaccccgagctgcacttcagcgtcgtccgcgacctgctg
gtcgaacgcctcgccgctgcgccggagcggcagcgcttcctgatgggcggcatcaccttc
tgcggtatggttccgcagcgggcgatcccgttcaaggtggtcgccgtgctcggcctgaac
gacggcgagtttccgcgcaacagcagcgacgccggcctggacctgatggcgcgctatcgg
cggctcggcgaccgtgacgtgcgcagcgacgaccgctacctgttcctggaaaccctgatg
tcggcccgcgagcggttgcacctgagttacctgggcgaaggggtgatggacggcaagccg
agaaaccctgcgcagccgctgtcggagctcttggcggtactggatgcatccgccggcctg
gccgctgacgacaccgacacgccgcggccgtggatcatccgtcatcccctgcagcccttc
gatgcccgctattgcgacggcagcgacccgcgcctgttctcctatcaacaggaattcgcc
gccatgcatgcccagggcgtacaacccgacgtcgccccgttcctcgatcgcgacggcacc
cgcgaggtggttctcgagggcccgattgcattgcgggaggtacaggcctactaccgcgac
cccgccgcgcaggtgctgggccggcgcatgcagatcagcctggacgcgctggtggatgat
cgccttcccagcgaggagccggtcgacccccggtttggcgcgctggattcggtgccacgg
aagctgttcttcaacgatgcgctgccggcctggccggatgggcagtggccgccggaacgt
gcgccggactggctgcgcctgggcggcatcatgccgccggggaggccgggcgtgcaggcc
tgggaagactccgcggcggcggtggcaaaactgctcgaacggctggccgatctgccggcg
ttcgagcatggcgtgccggcgccggtcagcgtggtgattgatcagcccatcggggacgtc
gcgctggtcggtcaggttgctcacgtgtaccggctcagccacgagggccgcgaacactgg
cagatgctgcgcgcatttcccggtcagggcggcgctttgaaggcggagaaggatctggac
ttcaaggaccgcgtgccgatgttcatggactgggccttgctgcgcctgcatacggcggga
gggggtgggcggatgccgacggtgcgtttggcgaccctggtcgacgacgagattccaagc
tggtccggcgcgctgaacgcctgggacgaggcctttgtggaggcagcgccggaggaacga
tcgcagctgctgagcgatctgcagcggcggctctcgcgcttgctgcactggtggcagcag
gcgcagggcaggccacgctggtactttccgaaaaccgcctggaaggcgatccaacccacg
gtcagtccgcgcagcggtgccggcgggcaggatgatcgcgagccagcgcccgcaaacgtc
gagagtatctgggtggcgacgcacgacggcggcaccggcgagcgcgattacgcgcccggc
tacagccggctgctggccggtggcgtggatttcgccggcggcagcaacgagctggccgaa
ctgcaccgctttgccttggcgcttcacgaatgcatcgacatggcatcgccgctgcgccgc
aacgcgaccgccgacgaatctgcttgcatggagaagcagcaatga
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