Novilysobacter avium: INQ42_08180
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Entry
INQ42_08180 CDS
T08144
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ42_08180 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lavi03019
]
INQ42_08180 (pcnB)
Enzymes [BR:
lavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
INQ42_08180 (pcnB)
Messenger RNA biogenesis [BR:
lavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
INQ42_08180 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QOW21259
LinkDB
All DBs
Position
complement(1812227..1813564)
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AA seq
445 aa
AA seq
DB search
MPEQNPSSKPELRIIPRDQHNVSRKDISPNALRVLYRLRDGGFSAYLVGGAVRDLLAGRQ
PKDFDVATSATPEEVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANTDDGSGDREQH
EGGRLLRDNVYGTIEDDAVRRDFTANALYYTIEDFSVRDYTGGFEDVQKRLMRLIGDPET
RYREDPVRMLRAVRLAAKLGFEIEPATAEPIPRLASLLSEAASARLFEECLKLFLSGHAV
KSFEGLEARGLLPALFPDTAAALKANRSGALRSVVIDGLRGTDERVANDEPVSPAFLFAL
LLWPAYCRALIALQAQGVQPIDAQRRAADRVTVRQLSTVALPRRFSIPMQEIWLLQSRFS
LHQTKRVSRMLGHPRFRAAFDFLSLRLAASDEHAEDVAFWREQQELVGMGPGQPSPRPRD
DGDAEDDAPARPRRRSRRSTAAAGE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaaaacccatcttccaagcccgaactgcggatcatcccgcgcgaccagcac
aacgtctcccgcaaggacatcagtcccaatgcgctgcgggtgctttacaggttgcgcgac
ggcggcttctccgcgtatctggtaggcggcgcggtgcgcgacctcctggccggacgccag
cccaaggacttcgacgtggccaccagcgcgacgcccgaggaggtcaagcagctgttccgc
aactgccgcctgatcggtcgccggttccgtctggcccacgtggtgttcggccgcgagatc
atcgaggtggcgacgttccgcgccaacaccgacgatggcagcggcgaccgcgagcagcac
gagggcggcaggctgttgcgcgacaacgtctacggcaccatcgaggacgatgcggtcagg
cgcgacttcaccgccaacgcgctgtactacacgatcgaagatttttcggtccgcgactac
accggcggcttcgaggacgtgcagaagcgcctgatgcggctgatcggcgatccggaaact
cgttaccgcgaggatccggtgcgcatgctgcgcgcggtccggctggcggccaaactcggc
ttcgagatcgagccggccacggcggaaccgatcccgcggcttgcgtccctgctctctgaa
gcagcgtcggcacgcctgttcgaggaatgcctgaagctgtttctctcaggtcacgcggta
aagagctttgaagggctcgaggcccgcggcctgctgccggcgctgttcccggataccgcg
gcggcattgaaggccaaccgcagcggcgcgttgcgcagcgtggtgatcgatggcttgcgc
ggcaccgatgagcgcgtggccaacgacgaaccggtgtcgccggcattcctgttcgccctg
ctgctgtggccggcgtattgccgcgcgttgatcgcgctgcaggcgcagggcgtgcagccc
atcgatgcgcagcgacgggccgctgaccgggtcacggtgcgccagttgtccaccgtcgcc
ctgccgcgccggttctccattccgatgcaggaaatctggctcctgcagtcgcgcttttcg
ctgcaccagaccaaacgcgtgtcgcggatgctgggccatccccggttccgcgccgcattc
gatttcctcagcctgcggcttgccgcgtccgatgagcacgccgaggacgtcgcgttctgg
cgcgagcagcaggagctggtggggatgggtcccggccagccgagtccgcggccgcgcgat
gatggggatgccgaggacgacgcacctgcgcgaccgcgccgacgaagccgcaggtccacc
gcagccgccggcgaatga
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