Novilysobacter avium: INQ42_08230
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Entry
INQ42_08230 CDS
T08144
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ42_08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lavi03019
]
INQ42_08230
Enzymes [BR:
lavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
INQ42_08230
Messenger RNA biogenesis [BR:
lavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INQ42_08230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
QOW21267
UniProt:
A0A7S6UJ80
LinkDB
All DBs
Position
complement(1822666..1824006)
Genome browser
AA seq
446 aa
AA seq
DB search
MSFENLGLAPALLRALAEQGYTSPTPIQVQAIPLIMAGNDLLGGAQTGTGKTAAFGLPLL
NRLSKQTGPNGSRKPRALILVPTRELAVQVNDSLRSYAKYLRMNFCTIFGGAGMGPQVEN
LRRGVDVIVATPGRLIDHIERGTVKLDEIEVLVLDEADRMLDMGFLPAIKRILGRVPAER
QTLLFSATFESQLRQLALQFMRDPKQVQVATNNAIANTITHRAHPVDSGRKRDLLIDIIA
KRPGDQVLVFGRTKHGCNRLAEQLEAAGLRSVAIHGNKSQAQRQKALRDFKGNRARVLVA
TDVAARGLDIPDLPLVINFDLPMVAEDYVHRIGRTGRNGSTGEALSLVSHDEGGLLRQIQ
HVLKKDVEMVVVPGYEPSRPIRLDVAIPNPRNNAGAGRPPRNNSPRAAARPHAAAPRHAH
AGAPRQRSAGPGARGGRGSFRDGSSA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaaacctcggccttgcgcctgccttgctgcgcgcgctcgccgaacagggc
tacaccagcccgaccccgatccaggtccaggccattccgttgatcatggccggcaacgac
ctgctcggcggcgcccagaccggtaccggcaagaccgccgcgtttggcctgccgctgctc
aaccgcctctccaagcagaccggcccgaacggttcgcgcaagccgcgcgccctgatcctg
gtgccgacccgcgagttggccgtgcaggtcaacgacagcctgcgcagctatgccaagtac
ctgcggatgaatttctgcacgatcttcggtggcgccggcatgggcccgcaggtcgagaac
ctgcgccgcggcgtcgacgtgatcgtcgccacgcccggccgcctgatcgaccacatcgag
cgcggcacggtgaagctcgacgagatcgaagtgctggtgctggatgaggccgaccgcatg
ctcgacatgggcttcctgccggcgatcaagcgcatcctgggccgcgtaccggccgagcgc
cagacgctgctgttctcggcgacgttcgaatcccagctccgccagctcgcgctgcagttc
atgcgcgaccccaagcaggtccaggtcgccaccaacaacgcgatcgccaacacgatcacc
caccgtgcccatccggtggacagcggccgcaagcgcgacctgctgatcgacatcatcgcc
aagcgccccggcgaccaggtgctggtgtttggtcgcaccaagcacggctgcaaccgtctg
gccgaacagctcgaggccgccggcctgcgctcggttgccatccatggcaacaagagccag
gcgcagcgccagaaagccctgcgcgacttcaagggcaaccgtgcccgcgtgctcgtggcg
accgacgtggccgcccgcggcctggacatccccgacctgccgctggtgatcaacttcgac
ctgccgatggtggccgaggactacgtgcaccggatcggccgtaccggccgcaacggctcc
accggtgaggcgctgtcgctggtctcccacgacgagggtggcctcttgcgccagatccag
cacgtgctgaagaaggacgtggagatggtggtcgtgccgggctacgagcccagccgtccg
atccgcctggacgtggcgattccgaacccgcgcaacaacgccggtgccggccgtccgccg
cgcaacaacagcccgcgcgcggccgcacgtccgcacgcggcagcaccgcggcatgcccat
gcaggcgcgccgcgccagcgttcggcgggtccaggcgcccgcggcggtcgtggttcgttc
cgcgacggttccagcgcctga
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