Novilysobacter avium: INQ42_09060
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Entry
INQ42_09060 CDS
T08144
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lavi
Novilysobacter avium
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lavi03009
]
INQ42_09060 (rlmD)
Enzymes [BR:
lavi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
INQ42_09060 (rlmD)
Ribosome biogenesis [BR:
lavi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INQ42_09060 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
MTS
RrnaAD
Methyltransf_11
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltr_RsmB-F
UPF0020
Methyltransf_15
CMAS
Methyltransf_23
Ubie_methyltran
TRAM
PrmA
Methyltransf_32
zf-C3HC4_3
FtsJ
MetW
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QOW21409
LinkDB
All DBs
Position
complement(2018233..2019561)
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AA seq
442 aa
AA seq
DB search
MARLDKTPFEVDIHALSPDGRGVARLAGDVTMLVAGALPGERVLATRTGRRRCVHEARTV
EVLQAAADRVTPRCGHFGTCGGCALQHLDGSSQILAKQAVLLDHLRDAAGIVPPQLLEPL
VDAAWGYRRKGRFSVRRVEKKGKTLVGFRETDPRFVAEIHHCHTVIPEVGGKVAALAELV
DSLQARSDIPQIEFIAGDATAQFNGVALVVRHMAPLSTDDQASLVAFGQQHGFAIFLQPG
GVDSVHPLWPADPALSFRMPHWNLEFAFRPLDFIQVNAGLNERMVQLAMDLLDVQPGDRV
LDLFCGLGNFTLTLARRVREVVGVEGDAGLVERARDNAQRNGIDNARFHAADLSLDLSGQ
PWMEQGFDKLLLDPPRSGAAFVLEHLPLDQFQRIVYVSCHPASLARDTALLAARGWKLQV
AGVMDMFPQTAHVESIAMFEKA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgtctcgacaaaaccccgtttgaagtggacatccacgccctgtctccggacggt
cgcggcgtggcccgtcttgccggtgatgtgacgatgctggtggcgggcgcgctgcccggc
gagcgcgtgcttgcgacccgcaccgggcgccggcgctgcgtccacgaggcacgcaccgtt
gaggtattgcaggcggcggcggaccgggtgacgccgcggtgcgggcacttcggcacgtgc
ggtggctgcgcgctgcagcacctcgacggcagcagccagatccttgccaagcaggccgtc
ctgctggaccacctgcgtgacgcggcgggtatcgtgccgccgcaattgcttgagcccttg
gtggatgccgcctggggctatcgacgcaaaggccgcttctcggtgcggcgggtggagaag
aaggggaaaacgctggttggattccgcgagaccgacccgcgttttgtcgccgagatccac
cattgccacaccgtcatccccgaggtgggcggaaaggtcgcggcactcgccgagctggtc
gacagcctgcaggcacgcagcgacattccacagatcgagttcatcgccggcgatgccacc
gcgcagttcaatggcgtggcgctggtggttcgccacatggcgccgctgtccaccgatgac
caggcatcgctggtcgccttcggccagcagcacggctttgcgatcttcctccagcccggc
ggtgtcgacagtgtccatcccctgtggccggccgatccggcgctgtcgttccggatgccg
cactggaacctcgagttcgcgttccgtccgctggatttcatccaggtcaacgcggggctc
aacgaacgcatggtccagctggcgatggacctgctggacgtgcagcccggcgaccgcgtg
ctcgacctgttctgcgggctgggcaacttcaccctgacgctggcgcgccgtgtgcgcgag
gtggtgggagtggaaggtgatgccggcctggtggagcgcgcgcgggacaacgcgcagcgc
aacggcatcgacaatgcgcgcttccacgccgcggacctgtcgctggacctgtccggccag
ccgtggatggagcagggcttcgacaagctgctgctggatccgccgcgctcgggtgcggcg
ttcgtgctggagcatctgccgctggaccagttccagcgcatcgtctacgtcagctgccat
ccggcctcgctggcgcgcgacaccgcgttgctggccgcgcgtggctggaagctgcaggtg
gcgggagtgatggacatgttcccgcagaccgcccacgtggagtccattgcgatgttcgag
aaggcctga
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