Novilysobacter avium: INQ42_09465
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Entry
INQ42_09465 CDS
T08144
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lavi
Novilysobacter avium
Pathway
lavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
INQ42_09465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lavi03400
]
INQ42_09465 (mfd)
Enzymes [BR:
lavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
INQ42_09465 (mfd)
DNA repair and recombination proteins [BR:
lavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
INQ42_09465 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QOW21471
LinkDB
All DBs
Position
2093761..2097300
Genome browser
AA seq
1179 aa
AA seq
DB search
MPASPSPTPPLPKAGHLRAWWRAPASLSGLAFHIARAAATHPGPLLAIVRDNQSAQQLEA
DLHTLLGSGASAGDPEPPGSDAASLPVLHFPDWETLPYDHFSPHPEIISQRLATLNRLPR
LQRGIVVVPVQTLLQRLAPLRHVVGGSFDVTVGQRLDLDAEQRRLQSAGYHNVPQVLDPG
DFAVRGGLLDVYPMGASQPFRVELLDDQIDTIRGFDPETQRSEDKIDAVKLLPGRELPLD
DASLKRALDALRERFDLDTRRSGLYQDLKAGTAPSGIEYYLPLFFDQTATLFDYLDEATL
PLLGEGVNEAADAFWRQTGERYEQRRHDLERPLLPPDALYLSPDALRERLNQGARIEVCG
ESHPQGTRAEVLASQPAPALPISARDQVPAGELKSFLGHYPGRVLIAADSAGRREALLEI
LRAAELEPEVLPDFQAFLGSNRITAKAPADSAGDTRFAIAVAPLEDGFALTAPALAVLTE
RQLFPERATQPRRPRRAGREPEAIVRDLGELSEGAPIVHEDHGVGRYRGLVTLEAGGEKN
EYLEIEYAKGDRLYVPVGQLHLINRYSGASVETAPLHSLGGEQWSKAKRKAQEKVRDVAA
ELLEIQARRRARAGLAIDLDRAMYEPFAAAFPFEETPDQHAAIEAVLRDLQSSQPMDRVV
CGDVGFGKTEVAVRAAFATAAAGKQVAVLVPTTLLAEQHYRNFSDRFADWPLKVEVLSRF
KTPKQIKAELEKAAEGTIDVIVGTHRLLQKDVRFKDLGLVIVDEEQRFGVRQKEALKALR
ANVHLLTLTATPIPRTLNMAMAGLRDLSIIATAPAHRMAVQTFVVPWDDSQLREAFQREI
SRGGQAYFLHNDVESIGRMQRELEALVPEARIGIAHGQMPERELERVMLDFQKQRFNVLL
CSTIIESGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHRAYAYLVVPDTRSISADA
KKRLDAIAAMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSI
RQGKLPDLDATEERGAEVELHVPALIPEDYLPDVHTRLTLYKRISGARDAHDLRELQVEM
IDRFGLLPDPAKHLFAIAELKLQATELGVRKLDIGPTSGRLQFVEKPKVDPMAVIRMIQG
QPNLYRMDGPDKLRLSLELAEPAARIAAARALLIALAPT
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcctccccctcccccactccgccgctgccgaaagcgggccatctgcgtgcctgg
tggcgcgcgccggcgtcgctgtcgggcctcgctttccacattgcccgcgctgcggccacc
catccggggccgcttctggcgatcgtgcgcgacaaccagtccgcgcagcagctggaggcg
gacctgcataccttgctgggctccggcgcgtcggcgggcgatcccgagccgcccggaagc
gacgctgcatccctgccggtgctgcacttcccggactgggaaacgctgccgtacgaccac
ttcagcccgcacccggaaatcatcagccagcgactggccacgttgaaccgcttgccgcgg
ttgcaacgagggattgtcgtcgtgccggtgcagacgctgttgcagcgactggcgccgctg
cgccatgtggtcggcggcagtttcgatgtcaccgtcggccagcgcctcgacctggatgcc
gagcagcgccggctgcagtcggccggctaccacaacgtgccccaggtgctcgacccgggt
gacttcgccgtgcgcggcggcctgctggacgtgtacccgatgggggcctcgcagccgttc
cgggtggagctgcttgacgaccagatcgacaccatccgcggctttgacccggagacccag
cgctccgaggacaagatcgatgcggtcaagctcctgcccggccgcgaactgccgctggac
gatgcatccctgaagcgcgcgctggatgcactgcgcgagcgctttgacctggacacccgc
cgcagcggcctgtaccaggacctcaaggccggtacggcgccgtcggggatcgagtactac
ctgcccctgttcttcgaccagaccgccaccctgttcgattacctggacgaggcgaccctg
ccgctgctcggcgaaggcgtcaacgaggccgccgacgcgttctggcgccagaccggcgag
cgctatgagcagcgccggcatgatctggagcgaccgctgctgccgccggacgcgctctac
ctgtcgccggatgcgctgcgcgaacggctcaaccagggcgcccgcatcgaggtctgcggc
gaatcgcatccgcagggtacgcgtgccgaagtgctggccagccagccggcgcccgcgctg
ccgatcagtgcgcgcgaccaggttcccgccggcgagctgaagtcgttcctcggccattat
ccgggccgggtcctgatcgccgccgattcggccgggcgccgcgaggcgctgctggagatc
ctccgcgctgccgagctggagccggaggtgctgccggatttccaggcgttcctgggcagc
aaccggattaccgccaaggcgccggcagacagtgcgggcgacacccgcttcgccatcgcc
gtggctccgctggaagatggtttcgctctcaccgcgcccgcgctcgcggtcctgaccgag
cgccagttgttccccgaacgggcgacccagccgcgtcgtccgcgtcgcgcgggacgtgag
ccggaggcgatcgtccgcgacctgggcgagctgtccgaaggcgcgccgatcgtccacgag
gaccacggcgtgggccgctaccgcgggctggtcacgctggaggccggcggcgagaaaaac
gaatacctggagatcgagtacgccaagggcgaccggctgtacgtgccggtcggccagctg
cacctgatcaaccgctactcgggcgcgtcggtggaaaccgcgccgctgcactcgctgggc
ggggagcaatggagcaaggccaagcgcaaggcgcaggaaaaggtccgcgatgtggccgcc
gagctgctggagatccaggcccggcgccgggcccgcgccggactggcgatcgacctggac
cgggcgatgtacgagccgttcgcggccgcgttcccgttcgaggagacccccgaccagcac
gccgcgatcgaggcggtgctgcgcgacctgcaatccagccagccgatggaccgggtggtc
tgtggcgacgtcggcttcggcaagaccgaggtcgccgtgcgcgccgcgttcgcgaccgcc
gcggcgggcaagcaggttgcggtgctggtgccgaccacgctgctggccgagcagcactac
cgcaacttcagcgaccgcttcgccgactggccgttgaaggtggaagtgctgtcgcgcttc
aagacgcccaagcagatcaaggccgagctggaaaaggcggcggaaggcacgatcgatgtg
atcgtggggacccaccggctgctgcagaaggatgtccgcttcaaggacctgggactggtc
atcgtggacgaggaacagcgcttcggcgtgcgccagaaggaggcgctgaaggccctgcgc
gcgaacgtgcacctgctgaccctgaccgccacgccgatcccgcgcacgctcaacatggcg
atggccgggctgcgcgacctgtcgatcatcgccaccgcgccggcccaccggatggcggtg
cagaccttcgtggtgccgtgggacgacagccagctgcgcgaggcattccagcgcgagatc
tcccgcggcggccaggcctacttcctgcacaacgacgtggaaagcatcggccgcatgcag
cgcgagctggaagcgctggtgccggaggcgcgcatcggcatcgcccacggccagatgccc
gagcgcgagctggagcgggtgatgctggacttccagaagcagcgcttcaacgtgctgttg
tgctcgaccatcatcgagtcgggcatcgacatccccaacgccaacaccatcatcatcaac
cgcgccgacaagttcggcttggcgcagctgcaccagctgcgcgggcgcgtcggtcgctcg
caccaccgcgcctacgcctatctggtggtgccggacacgcgctcgatcagcgccgatgcg
aagaaacggctggacgcgatcgcggcgatggacgaactgggcgccggtttcaccctggcc
acccacgacctggagatccgcggcgccggtgagctgctcggcgaggaccagagcgggcag
atggccgaggtcggcttcagcctctacacggagctgctggagcgcgccgtgcgcagcatc
cgccagggcaaactgcccgacctggacgccactgaggagcgcggcgcggaggtcgagctg
catgttccggcgctgatcccggaggactacctgcccgacgtgcacacccgcctgacgctg
tacaagcggatctccggcgcgcgcgacgcgcatgatctgcgcgagctgcaggtggagatg
atcgaccgcttcggcctgctgcccgatccggccaaacacctgttcgccatcgccgaactg
aagctgcaggccaccgaactgggcgtgcgcaaactcgacatcggtcccaccagcggccgg
ctgcagttcgtcgagaagcccaaggtcgacccgatggcggtgatccgaatgatccagggc
cagcccaacctgtaccggatggacggccccgacaagctgcgcctcagcctggaactggcc
gagcccgccgcgcgcattgctgccgcgcgcgctctgctgattgccctggcaccaacgtga
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