Novilysobacter avium: INQ42_10355
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Entry
INQ42_10355 CDS
T08144
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lavi
Novilysobacter avium
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lavi03019
]
INQ42_10355 (hrpA)
Enzymes [BR:
lavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
INQ42_10355 (hrpA)
Messenger RNA biogenesis [BR:
lavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
INQ42_10355 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
AAA_30
SRP54
nSTAND3
T2SSE
NACHT
AAA_25
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QOW21630
LinkDB
All DBs
Position
complement(2290714..2294922)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNRSNSHGNAASRPRSPDGAGLDAARRNIDDALTRDRGRLHGLWSRWRNAPADAALQARF
EDALKDSITRREARAATLPRAPVDPSLPIASQAERIVELIGRHQVIVVAGETGSGKTTQL
PKLCLAAGRGAAGMIGCTQPRRIAARAVAKRVAEELNTPLGTTVGFQVRFSENVGDDTAI
KFMTDGILLAEIQSDRWLSRYDTILIDEAHERSLNIDFLLGYLKQLLRKRPDLKVIVTSA
TIDTARFSAHFDNAPVVDVEGRGYPVSVRYRPLEGGGETDDGAAARDGERTINDGIVAAC
DEISREDPRGDVLVFLPGEREIRDAHRALEARKYRHTEVLPLYARLSVRDQDRVFKPGTQ
RRIVLATNVAETSLTVPRIGYVVDPGLARVKRYSPRSKLDRLHIEPISQASANQRKGRCG
RVSDGICYRLYSEADFESRPQYTDPEIHRAALAGVILRMLSLGLGDIEQFPFLEPPDTRA
IADGWQQLAELGAVDEKRKLTAVGRLMARMPVDVKLARMLVAANAHGCMREMLAIASFLG
IQDPRERPADQRAAADNAHALFADPASEFAGILKLWDAYQDAHEASTQSQLRRWCEKHFL
GFLRMREWRELHRQLKLMAVELGWDPGASAVAAGGTGRKDKTAVPASTPAPRARRRRRGG
RPPLDPPATAGDGQVAPTTEGEEERLGRGAYALLHRALIAGLPTQIGHRIKPADAPQPAA
TTKPGERKVVDRKPGGYEGPRGRRFQLFPGSALARRPPPWVLSATLLDTAQLWAMTNAAI
EPDWVIDELQHLLARRHHDPRWARSQGKVLGSEQVSLFGLVLAPKRPVHYGALYPEESRV
IFARDALVTGEINTRSVFLQRNLATLEKALEEEAKQRRAGLVVDETWMAEWYLQRLPADV
HNAQALDAWYARLPALQKAALEWTLDDLMVGDSTDVRRFPSSIALGSVQLAVSYRFEPGA
LDDGMTVSVPLHLLNALDPVRLGWLVPGLVEDKATALIRGLPKAQRRNYVPAPDFARAFH
EAFPDPQDAPMPEVLARFLGKVTGSTLEAGELDESALEPHLRVNLRLLDAADERQRGADV
VLAESRDLHELRARFGERAARAFAARAAKGMGQRGLVRFPDEPIPATVPGVAGMPAFPAL
HDDGDSVSLQVHADREKAERAHPGGVRRLLWLTLGDARKQARKQLPVSAKVGLLYAAIEA
AAPRTQAPPEGDRLRADLVDGAFAALVANDVAGIRDPAAFEARRAEVAKALFGEAMARLQ
QAEEILTAVSHARASLESPLMGWASGNLDDMRAQLAALTPAGFLRDVPADVLKEYPRYLK
ALALRGERALRDPTRDQARMLELTPFSDALAEAAARGDLEQSGWQALRWQLEELRVSLFA
QELGTRGVSAKKLAAQLARLRG
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtagcaactcccatggcaacgccgcgtcacgaccgcgcagccccgacggtgcc
gggctggatgccgcgcgtcgcaacatcgacgacgcgctgacgcgtgatcgcgggcgcttg
catggcctgtggtcgcgctggcgcaatgcgccggccgatgcggcgctgcaggcgcgtttt
gaggatgcgctgaaggactcgatcacccgccgcgaggcgcgggccgcaaccctgccgcgc
gcaccggtcgacccgtctctgccgattgccagccaggcggagcgcatcgtcgagctgatc
ggcaggcaccaggtgatcgtggtcgccggcgagacgggctcgggcaagaccacccagttg
cccaagctgtgtctggcggcagggcgcggggcggcgggcatgatcggctgcacccagccg
cgacggattgccgcgcgcgcggtggccaagcgcgtcgccgaagaactcaacacgccactg
ggcaccaccgtcggcttccaggtccgcttcagcgagaacgtcggcgacgacaccgcgatc
aagttcatgaccgacggcatcctgctggcggagatccagtcggatcgctggctgtcgcgc
tacgacacgatcctgatcgacgaggcgcatgagcgcagcctcaacatcgacttcctgctg
gggtatctcaagcagctgctgcgcaagcggccggacctgaaggtcatcgtgacctcggcg
acgatcgacaccgcgcggttctcggcgcatttcgacaacgcgccggtggtcgatgtcgaa
gggcgcgggtatccggtgtcggtgcgttaccggccgctggaaggcggcggcgagaccgat
gatggcgccgcggcgcgcgacggcgaacgcacgatcaatgacggaatcgtcgccgcctgc
gatgagatcagccgcgaggatccgcgtggcgacgtgctggtgttcctgcccggcgagcgc
gagatccgtgacgcccaccgggcgctggaggcgcgaaagtatcggcacaccgaggtgctg
ccgctgtacgcgcgcctttcggtgcgcgaccaggaccgggtgttcaagcccgggacccag
cgccgcatcgtgctggccaccaacgtcgccgagacctcgctgacggtgccgcggatcggc
tacgtggtcgatccggggctggcaagggtcaagcgctacagcccgcgcagcaaactggac
cggctgcacatcgagcccatcagccaggccagcgccaaccagcgcaagggtcgttgcggg
cgggtgtcagacggcatctgctaccggctctacagcgaggcggacttcgagtcgcgcccg
caatacaccgacccggagatccaccgcgcggcgctggccggcgtgatcctgcgcatgctg
tcgctgggcctgggcgacatcgagcagttcccgttcctggaaccccccgatacccgcgcg
attgccgacggctggcagcaactggccgaactgggcgcggtcgatgagaagcgcaagctg
accgcggtcggccggctgatggcgcggatgccggtggacgtgaagctggcgcggatgctg
gtggccgccaacgcccacggctgcatgcgcgagatgctcgcgattgcctccttcctgggc
atccaggacccgcgcgagcgcccggccgaccagcgcgctgcggcggacaacgcccatgcg
ctgttcgccgatccggcgtccgagttcgccggcatcctcaagctctgggacgcctaccag
gacgcgcatgaggcgtccacccagtcgcagctccgacgctggtgcgagaagcacttcctc
ggcttcctgcgcatgcgcgagtggcgcgaactgcaccgccagctgaagttgatggcggtc
gaactgggctgggatccgggcgcgtccgcggtcgccgccggtggcaccggacgcaaggac
aagaccgcggtgccagcgtccactccggcgccacgcgcgaggcggcgtcgccgcggcggt
cgcccgccgcttgacccgccggccacggcaggggacggccaggtggcgccgacaactgag
ggtgaagaggaacgccttggccgcggcgcctacgcgctcttgcaccgagccctcatcgcc
ggcctgccaacccagatcggtcaccgcattaaaccggccgacgcgccacagcccgcggcg
acgaccaagccgggcgagcgcaaggtcgttgatcgcaagcccggtggttacgaaggcccg
cgcggtcgccgcttccagctgtttcccggatcggcgctggcgcggcgaccgccgccgtgg
gtgttgtcggcgacgctgctggataccgcccagctgtgggcgatgaccaacgccgcgatc
gagccggactgggtcatcgacgaattgcagcacctgcttgcgcgccgccatcacgatccg
cgctgggcgcgctcgcagggcaaggtgctgggcagcgagcaggtcagcctgttcggcctg
gtgctcgcacccaagcggccggtgcactacggcgcgctgtatccggaggagagccgggtg
atcttcgcccgcgacgccctggtgaccggcgagatcaacacccgcagcgtgttcctgcag
cgcaacctggcgaccctggagaaggcgctggaggaggaagccaagcagcgtcgcgccggg
ctggtggtcgatgagacgtggatggccgagtggtacctgcagcgcctgcccgccgatgtc
cacaacgcgcaggcactggatgcctggtacgcccgcctgcccgccctgcagaaagccgcg
ctggagtggacgctggatgacctgatggtcggcgacagcaccgacgttcgccgcttccca
tcatcgatcgcgctgggcagcgtgcaattggcggtcagctaccgcttcgagccgggggcg
ctcgacgacggcatgaccgtgtcggtgccgctgcacctgctcaatgcactcgatccggtg
cgcttgggatggctggtgccggggctggtggaagacaaggccaccgcgctgatccggggc
ctgcccaaggcgcagcggcgcaactacgtgcccgcgccggattttgcgcgggccttccac
gaggcgttccccgacccacaggatgcgccgatgccggaggtgctcgcgcgcttccttggc
aaggtcaccggcagcacgctggaggccggagaactcgacgagtcggcgcttgagccgcac
ctgcgcgtcaacctgcgccttttggacgctgcggacgagcgacagcgcggtgccgacgtc
gtactggccgagtcgcgcgacctgcacgagcttcgtgcgcgcttcggcgagcgcgcggcc
agggcctttgccgcacgcgcggccaaaggcatgggccagcgcggtctggtgcgcttcccc
gatgaacctattcccgccaccgttccgggagtcgccgggatgccggcgttcccggcgctg
cacgatgacggcgacagtgtctccctgcaggtccacgcggaccgcgagaaggccgagcgt
gcgcatccaggcggcgtccgcaggctcctgtggctgaccctgggtgatgcgcgcaaacag
gcgcgcaagcaactgccggtctcggccaaggtgggacttctgtacgcagcgatcgaggcc
gccgccccgcgcacgcaggcgccgccggaaggcgaccgtctgcgcgcggatctcgtcgat
ggcgcgtttgccgccctggtggccaacgacgtcgccggcatccgcgatccggcggcattc
gaggcacgtcgtgccgaggtcgccaaggccctgttcggcgaggccatggcgcgcctgcag
caggccgaggagatcctgaccgcggtctcgcacgcccgcgccagcctggagtcgcctctg
atggggtgggccagcggcaatctcgacgacatgcgcgcgcaactggccgcgctgacgccg
gcgggtttcctgcgcgacgtgccggccgacgtgctcaaggagtacccgcgctacctcaag
gcgctggccttgcgcggcgagcgcgcgctgcgcgatcccacccgcgaccaggcacgaatg
ctggagctgacgccgttcagcgatgcgctggcggaggctgccgcgcggggtgacctggag
caatccggatggcaggcgctgcgctggcagctggaggagttgcgggtgtcgctgttcgcc
caggaactgggcacacgcggcgtctcggccaagaaactggccgcgcagctggcccggctg
cgcgggtga
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