Novilysobacter avium: INQ42_12775
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Entry
INQ42_12775 CDS
T08144
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lavi
Novilysobacter avium
Brite
KEGG Orthology (KO) [BR:
lavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lavi03019
]
INQ42_12775 (hrpB)
Enzymes [BR:
lavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
INQ42_12775 (hrpB)
Messenger RNA biogenesis [BR:
lavi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
INQ42_12775 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
Flavi_DEAD
HA2_N
SepZ
HA2_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOW22054
LinkDB
All DBs
Position
complement(2838914..2841418)
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AA seq
834 aa
AA seq
DB search
MSLTEFPIDELLPQIRQSLSARTRLVLEAPPGAGKTTRVPPALLDEPWLQGRRIIMLEPR
RVAARAAARFMAAQRGEAVGATVGYRIRFDNQVSADTRIEVVTEGILTRMVQDDPGLEGV
GGVIFDEFHERHLAADLGLALVLDVQSALREDLRIVVMSATLDGERLAGFLDAPRLSSAG
RSFPVEIGHFPARREERLEHQVARAVARTLASHPGDLLVFLPGQREIARVRQLLDGQIGD
SGVDVLALHGELPVEEQARVLQPDAGARRRVVLATNVAESSVTLPGVRVVIDSGLAREPR
FDPNSGFPRLDVVLVSQASADQRAGRAGRVASGWAYRLWPQSQRLEPQRRAEIGQVELAG
LALELAAWGDPDLRFPDPPPAGALASARDLLQTLGALDGATITADGRRMLQLGTHPRLAA
MLLAAADDKERALACDLAALLESRDPLRSRSDALADRWQALSAFRRHRLGADASRSALAA
IDQVARQWRRRLRCNAKPPADVPTHLLGDLLAHAWPDRIAHQHPTDPWRYQLANGRSARL
MDDSVLFGEPWLVIAELRDEGRDARVLRGVPLDPQRLERDWATHFEETERVFWDDAARRI
SAVRERRFDRIVLDSRPLANPDRSQYAAALADAVRQLGLDALPWTEALRQWRARVRCLRV
WCPELELPDLSDEALLAGIDTWLLPALTGKSRLDALSEDELANALRSLVSWSQRSRIDEV
APACIAVPSGLQRPIHYAFDDAAGEPVPPVLAVKLQELFGLADTPAIANGRVPLTLHLLS
PGGRPLQVTGDLRGFWERTYPEVRKEMKGRYPRHPWPEDPWSATATHRAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttaccgaattccccatcgacgagctgctgccgcagatccgccagagcctgtct
gcgcgcacgcgcctcgtgctggaagcgccccccggcgccggcaagaccacccgggtgccg
ccggcgctgctggatgagccgtggctgcagggacgacggatcatcatgctggaaccgcgc
cgggtcgccgcgcgcgccgcggcacggttcatggcagcgcaacgcggcgaggccgtcggc
gccacggtcggctaccggatccgcttcgacaaccaggtctccgcggacacccggatcgag
gtcgtcaccgagggcatcctgacccgcatggtccaggacgatccgggcctggagggcgtg
ggcggggtgatcttcgatgagttccacgaacgccacctggcggccgacctcggcctggcg
ctggtgctggatgtgcaatcggcactgcgcgaggacctgcgcatcgtggtcatgtccgcc
acgctggacggggagcggctggcgggattcctcgacgccccgcggctttccagtgcgggg
cgcagcttcccggtggaaatcggccattttcccgctcgccgcgaggagcgccttgagcat
caggtcgcccgcgcggtcgcccgcacgctggcgtcgcatcccggcgatctgctggtgttc
ctgcccggccagcgcgagatcgcgcgggtgcgccagctgctggacgggcaaattggcgat
tcaggcgtcgacgtgctcgcgctgcacggcgagttgccggtggaggagcaggcgcgcgtg
ttgcaacccgatgcgggcgcgcggcggcgggtggtgctggccaccaacgtcgccgagtcc
agcgtgaccctgcccggggtgcgcgtcgtcatcgattcgggcctggcccgcgagccccgg
ttcgatcccaacagcggcttcccacgcctggacgtggtgctggtctcgcaggcgtctgcc
gaccagcgcgccggccgggcggggcgggtggcgtccggctgggcctaccggctgtggccg
cagtcgcagcgcctcgagccgcagcgccgcgccgagatcggccaggtcgagctggccggg
ctggcactggaactggcggcgtggggcgatccggacctgcgctttccggatccgccgccc
gcaggcgcgctggcgtcagcccgcgacctgctgcagacgctcggcgcgctggacggtgcg
accatcacggccgacggtcgccggatgctgcaactcggcacccatccgcgccttgcggcg
atgctgctggcggccgccgatgacaaggagcgcgccctcgcctgcgacctcgccgcgctg
ctggagtcgcgcgatccgctgcgctcgcgcagcgatgcactggcggaccgctggcaggcg
ctgtcggcattccgccgccatcgcctcggcgctgacgcctcgcgcagcgcgctggccgcc
atcgaccaggtcgcccggcaatggcgtcgacgtctgcgctgcaacgccaagccgccagcg
gacgttcccacgcatctgcttggcgacctcttggcccacgcctggccggatcgcatcgcc
caccagcatccgaccgatccgtggcgttaccagctggccaacgggcgcagcgcgcggctg
atggacgacagcgtgttgttcggcgagccttggctggtgatcgccgagctgcgcgatgag
ggccgcgatgcgcgggtgctgcgcggtgtaccgctggacccgcagcgcctggagcgtgac
tgggcgacgcatttcgaggaaaccgagcgggtgttctgggacgacgcggcgcgccggatc
agcgcggtgcgcgagcgtcgctttgatcgcatcgtgctcgacagccggccactggcgaac
ccggaccgttcccagtacgcggctgcgctggccgacgcggtgcgccaactcggactcgac
gcgctgccgtggaccgaagcgctccgccagtggcgcgcgcgggttcgttgcctgcgcgtg
tggtgcccggagctggagcttcccgacctgagcgatgaggcgctgctggccggtatcgac
acctggctgctgccggccctgactggcaagagccggctggacgcgctcagcgaagacgag
cttgccaacgcgctcaggagtctcgtgtcctggtcgcagcgcagccgcatcgacgaggtg
gcaccggcgtgcatcgcggtgccgtccggcctgcaacggcccatccactacgccttcgac
gatgccgcgggcgagccggtgccgccggtcctcgcggtcaagctgcaggagttgttcgga
ctcgccgacaccccggccatcgccaacggccgcgtgccgctgaccctgcacctgctctcg
ccgggtggccggccactgcaggtcaccggcgacctgcgcggattctgggagcgcacctac
ccggaggtccgcaaggagatgaaggggcgttacccccgccatccctggcccgaagatccc
tggagcgcgacggctacccaccgcgccaagccacgcgggacctga
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