Lactobacillus sp. wkB8: LACWKB8_0861
Help
Entry
LACWKB8_0861 CDS
T03355
Name
(GenBank) Ribonuclease J1 (endonuclease and 5' exonuclease)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
law
Lactobacillus sp. wkB8
Pathway
law03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
law00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACWKB8_0861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
law03019
]
LACWKB8_0861
Messenger RNA biogenesis [BR:
law03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LACWKB8_0861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AIS09132
LinkDB
All DBs
Position
complement(884416..886095)
Genome browser
AA seq
559 aa
AA seq
DB search
MRIKNNEVAVVAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYLI
KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKGKLEEHGILRTTELH
EEHEDTVLKFKKLTVTFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPDF
QKMAKLGNEGVLALLSDSTNAEVTQFTKSERFVAKSLHDIITGIHGRIIFATFASNLYRV
STAIQAAKDTGRKVAIFGRSMENGVQNGIDLGYLNVPDGLIVDANEINHTPAEEVMILCT
GSQGEPLAALSRIANGTHRQISLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGANVVHG
RINNVHTSGHGGQEELKMMVRLTKPKYMIPVHGEYRMQVIHTELAQAAGVPAENTFVLEN
GEVVCFGPEGSRIAGHIPAGDVYVDTSGTADVGNVVVHDRQVLSEDGLVVVVATVDYKHK
RVLAGPDVLSRGFVYMRESTELINQAQKHIYHVLKSEMDKMEHPKDSIIRNAIIANLSDF
LYSKTKRRPMILPMLVEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcattaaaaataatgaagttgccgtcgttgcaatcggggggttgcacgaaataggc
aaaaatatgtattgtgttcaataccaagatgagattattatcatggattgtggtattaag
tttcctgaagatgatcttcttggcattaattatgtaatttctgattattcgtatttaatt
aaaaaccggaaaaaaattaaagcacttgttgtgagtcacggtcatgaagaccatattggc
ggtattccgtttttactggaaaaaattccagaaattccggtttacgccactccttttgct
ttggcacttattaaaggaaaactcgaagaacacggcattctgcggacaacagaattgcac
gaggagcatgaagacactgtccttaaattcaaaaaattaacagtgactttctttagaact
acccactctattcctgatactctgggtatagccgttcatactccgctgggtgcagtcgtg
tttactggtgatttcaaatttgatttaacacctgtcatgaatcaacctgcccctgatttt
caaaaaatggctaaattaggtaacgaaggtgttctagctttattatctgattcgactaac
gctgaagtaacgcaatttaccaagtccgaacgttttgtagccaaatcgctacatgacatt
attacaggaattcatggtcgaataatattcgccacctttgcctctaatctttaccgtgtt
tcaaccgctattcaggcggccaaagatactggacgtaaagttgccatttttggacggagc
atggaaaatggcgtacaaaatgggattgacttaggttacttaaatgttcctgatggtttg
atcgttgatgctaacgaaattaaccataccccggcagaagaagtcatgattttatgtact
ggttcccaaggtgaaccgctggcggctttatctcgaatagctaacggcactcacaggcaa
ataagtctgcaaccaggagatacagtaattttctcctctaacccgattcctggaaatacc
ttaagcgtcaatcatttgattaataaattaatggagggcggcgccaatgtcgttcatggc
agaataaataacgtccatacatctggacatggtggtcaggaagaacttaaaatgatggtt
cgtttgaccaaacccaagtacatgattcctgttcacggcgaataccggatgcaagtcatt
catactgaattagcacaggcagccggtgttccagcagaaaatacttttgtccttgaaaac
ggcgaagtagtttgttttggtcctgaaggatcaagaatagccggtcatattcctgcgggc
gatgtttatgttgacacttcaggtactgctgatgtgggcaatgttgttgtccatgacaga
caagtattatcagaagatggtttggtggttgtggtagcaactgttgattataagcataaa
cgtgtactggctggtcccgacgttttaagtcgcggttttgtctacatgagagaatctaca
gaattaattaatcaagcacagaagcatatttatcatgtgctaaaatctgagatggacaaa
atggaacacccaaaagacagcataattcgcaatgcgataatcgctaacctatcagacttt
ctgtattctaaaacaaaaagacggccaatgatcttacctatgttagttgagaaaaaataa
DBGET
integrated database retrieval system
