Leclercia adecarboxylata: APT61_01015
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Entry
APT61_01015 CDS
T04232
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lax
Leclercia adecarboxylata
Pathway
lax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT61_01015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lax03019
]
APT61_01015
03400 DNA repair and recombination proteins [BR:
lax03400
]
APT61_01015
Enzymes [BR:
lax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APT61_01015
Messenger RNA biogenesis [BR:
lax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APT61_01015
DNA repair and recombination proteins [BR:
lax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
APT61_01015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ALZ94661
LinkDB
All DBs
Position
221700..223529
Genome browser
AA seq
609 aa
AA seq
DB search
MVQAEVVNQELLAKQVLHETFGYQQFRPGQETIINTALAGRDCLVVMPTGGGKSLCYQVP
ALVLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQVRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMAL
TATADDTTRHDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLENHVRAEVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCVEEKPAGAL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQESCGNCDICLDPPKQYDGLMDARKAL
STIGRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGRDQSHEHWVSVIRQLIHLG
FATQNIAQHSALQLTEAARPVLRGVVELQLAVPRVVALKPRVMQKSYGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR
SHTDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggtgcaggcggaagtcgtaaatcaggagttgctggctaaacaggttttgcatgaaacc
tttggctaccagcagttccgcccgggccaggaaaccatcattaacaccgccctcgcgggc
cgtgactgtctggtggtaatgccgaccggcggcgggaaatcgttgtgctatcaggttccc
gcgctggtactgaacggcctgacggtggtggtgtcaccgctgatctcgctgatgaaagat
caggttgaccaactgctggcgaatggcgtggcggcggcctgtctcaactccacccaaacc
cgcgagcaacagcaggaagtgatggccgggtgccgtaccgggcaggtgcgtctgctgtat
atcgccccggaacgcctgatgctggataacttccttgagcatctggcgcactggaacccg
gtgctgctggcagtggatgaagcgcactgtatttcccagtggggccatgatttccgcccg
gaatatgccgcgctcggccagctgcgccagcgcttccctgagctgccgtttatggcgctt
accgccaccgccgacgataccacccggcacgatattgtgcggctgctgggccttaacgat
ccgctgatccaggtcagcagcttcgaccgtccaaacatccgctacatgctgatggaaaag
ttcaagccgctggatcagctgttgcgctatgtccaggagcagcgcggcaagtcgggcatc
atctattgcaacagccgggcgaaggtggaagacaccgctgcgcggctgcagagccggggc
ttcagcgccgcggcttatcatgccgggctggaaaaccacgttcgcgccgaggtgcaggag
aagttccagcgcgacgatctgcaaatcgtggtggcgaccgtcgcctttgggatgggtatc
aacaagccgaacgtgcgctttgtggtgcatttcgacattccgcgcaatattgaatcctac
tatcaggagacgggccgcgccgggcgtgatggcctgcctgcagaggcgatgctgttctac
gatccggctgacatggcctggctgcgtcgctgcgtcgaagagaaacctgccggggcgctg
caggatatcgagcgccacaagcttaatgcgatgggcgcatttgctgaagcgcaaacctgc
cgccgtctggtactgctgaactattttggcgaaggtcgccaggagtcgtgcggtaactgc
gatatctgtctcgatccgccgaagcagtatgacgggctaatggacgcgcgtaaggcgctc
tccaccattggccgcgtcaaccaacgctttggcatgggctacgtggtggaagtgctgcgc
ggcgccaacaatcagcgcatccgcgagatgggccacgacaagctgccggtgtacggcatt
ggacgcgatcagagccatgagcactgggtcagcgtcatccgtcagctgattcacctgggc
tttgcgacccagaacattgcccagcactccgcgctgcaactcaccgaagctgcccgcccg
gtgctgcgtggcgtcgtggagttacaactggccgtgccgcgcgtagtggcgctgaaaccg
cgggtgatgcagaagtcctacggcggcaactacgatcgcaagctgttcgccaaactgcgt
aagctgcgcaaggctatcgcggatgaagagaatatcccgccgtatgtggtgtttaacgat
gcgacgctgattgagatggccgagcagatgccgctcagcgccagcgaaatgctcagcgtc
aacggcgttggtacacgtaagctagagcgttttgggaaagaatttatggcgctgattcgt
tcccatacggatggcgatgatgaggagtag
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