Leclercia adecarboxylata: APT61_14025
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Entry
APT61_14025 CDS
T04232
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lax
Leclercia adecarboxylata
Pathway
lax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT61_14025 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lax03019
]
APT61_14025 (rne)
03009 Ribosome biogenesis [BR:
lax03009
]
APT61_14025 (rne)
Enzymes [BR:
lax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
APT61_14025 (rne)
Messenger RNA biogenesis [BR:
lax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APT61_14025 (rne)
Ribosome biogenesis [BR:
lax03009
]
Prokaryotic type
rRNA processing factors
APT61_14025 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ALZ97066
LinkDB
All DBs
Position
3003197..3006373
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARLSGVRCVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEYAERKLPEQPALAAFVMPEAPPA
PAQESTVAKPAAAKPAADVSQPAAQPGLLSRFFSALKKMFAGEEPQPAPAPVEKKEEKQE
RSPDRRKRQNNRRDRNERRDNRSDNNEGREGNESRDNRDNREGREGRERREGRDDNRRNR
REKPQQNAEDREIRQPAGEESEKSRSRDEQQPRRERNRRRNDDKRQAQQEVKALNREEET
VQDADQEERVQVMPRRKQRQLSQKVRFESQTDEAAVEAVAPQVEPVQSTELAKVDLPAVI
ENAPEQEETTEGRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLAIACASPE
MASGKAWIRYPVARPQEQQFDEQNVTAEAVAPVAPVVDEVITEAAAVVIPEPQPQTAEVE
TSHPEVIAAPVTEQPQIIAPEDVVVAEQVVEDVKAAEPVEITAEAVEPQPVVEVEVETQV
QPEVEIAVEPVAEEKPEVAEVKAPEVKPAPAPVAQVNEGVHHATAPMTRAPAPEYVPEAP
RHSDWVRPAFDFEGKGSAGGHSATHQATAPATRPQPAE
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcatcgaacccagccttgaagccgcatttgtagactac
ggtgccgagcgtcatggtttcctccccctgaaagagattgctcgcgaatacttcccttct
aactataacgcccatggccgtccgaacattaaagatgtcctgcgtgaaggccaggaagtt
atcgttcagatcgataaagaagagcgtggcaacaaaggcgccgcgctgaccacctttatc
agtctggcaggcagctatctggtactgatgccaaacaacccgcgcgcgggtggcatctct
cgccgcattgaaggcgacgaccgtaccgaactgaaagaagcgctggccagtcttgaactg
ccagacggcatgggcctgattgttcgtaccgcaggcgtaggcaaatctgccgaagcgctg
cagtgggacctcggcttccgcctgaagcattgggaagcgattcagaaagccgctgaaagc
cgccctgccccgttcctgatccaccaggaaagcaacgttatcgtacgtgccttccgtgac
tatctgcgtcaggacatcggtgaaattctgattgataacccaaaagtgcttgagctggct
cgccagcacattgccgcactgggtcgtcctgatttcaccagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagatcgaatcgcagattgaatccgccttccag
cgtgaagtccgtctgccatccggcggttctatcgttatcgacagcaccgaggcgctgacc
gccatcgacatcaactccgcacgtgcaacccgcggcggcgatatcgaagagacggcgttc
aacaccaacctcgaagcggcagatgagattgcgcgtcagctgcgtctgcgcgacctgggc
ggtctgatcgttatcgacttcatcgacatgacgccagtacgtcaccagcgcgcggtggaa
aaccgtctgcgtgaagcggtgcgtcaggatcgtgcgcgtattcagatcagccatatctcc
cgtttcggtctgctggagatgtcccgtcagcgcctgagtccgtcgctgggtgaatccagc
caccacgtctgcccacgctgtagcggcaccggcaccgtgcgtgacaacgaatctctgtca
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccattgtgcctgtgccggtcgcctcctacctgctgaacgaaaaacgtgccgcggtaagt
gctatcgaagcccgtctgagcggcgtacgctgcgtgatcgtgcctaacgaccagatgcaa
accccgcactactccgtgctgcgcgtgcgcaaaggcgaagagacttcaaccctgagctac
atgctgcctaagctgcatgaagaggcgatggctctgccgtccgaagaagagtacgccgag
cgtaaacttccagaacagcctgctctggcggcctttgtgatgccagaagccccacctgcg
cctgcgcaggagagcaccgttgccaaaccagcagcagctaaacctgcggcagacgtcagc
caaccggcagcgcagcctggcctgctgagccgtttcttcagtgccctgaagaaaatgttt
gctggcgaagagccacaacctgccccggcgccggttgagaagaaagaagagaaacaggag
cgttcaccggatcgtcgtaaacgtcagaacaaccgccgtgaccgcaacgagcgtcgcgat
aaccgttcagacaacaacgaaggccgtgaaggcaatgaaagccgtgacaatcgcgataac
cgtgaaggccgtgagggtcgtgaacgccgcgaaggacgtgacgataaccgtcgcaaccgc
cgtgagaagccgcagcagaacgcggaagatcgtgaaattcgccagccggccggcgaggag
tctgaaaagagcagatcgcgtgatgagcagcagccacgccgcgagcgcaaccgccgtcgt
aatgatgacaagcgccaggcgcagcaggaagttaaagcgctgaatcgcgaagaagagacc
gtgcaggatgcggatcaggaagagcgtgttcaggtcatgccacgccgtaagcagcgtcag
ctgagccagaaagtccgtttcgagtctcagaccgacgaagcagctgttgaagcggtagcg
ccacaggttgaacccgttcagagcaccgaactggcaaaagtcgacctgcctgcggtcatc
gaaaatgcccctgaacaggaagagaccaccgaaggccgtgacaatgcgggtatgccgcgt
cgctcacgtcgctccccgcgtcatctgcgcgtgagcggtcagcgtcgtcgccgttatcgt
gacgagcgttatccgctgcagtcgccaatgccgctggcaatcgcctgtgcgtcaccagaa
atggcctccggcaaagcctggatccgttatccggttgcacgtcctcaggagcagcagttt
gacgagcagaacgtgacggccgaagcggttgccccagtcgcgccagtggttgatgaggtt
atcaccgaggctgcggcagttgttatccctgagccacagccacagactgctgaagtggaa
acgtcacacccggaagtgattgccgcgcctgttactgaacagccgcagatcatcgcccct
gaagatgtggttgtcgcagagcaggtagtggaagacgttaaggctgccgagccggttgaa
attaccgcggaagccgtggagccacagccagttgtagaagtggaagtggaaacgcaagtt
caacctgaagttgagattgctgttgaacctgttgctgaagagaaacctgaagtcgctgaa
gtgaaagcgccggaagtgaaaccagcaccagcgcccgttgctcaggttaacgagggtgtt
caccacgccactgcgccaatgacccgcgcgccagccccggaatatgtgcctgaagccccg
cgtcacagcgactgggtacgcccggcgtttgatttcgagggtaaaggttcagcaggtggt
cacagcgcaacgcaccaggcgaccgcgcctgccacgcgtccacagccggctgaataa
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