Leclercia adecarboxylata: APT61_20310
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Entry
APT61_20310 CDS
T04232
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lax
Leclercia adecarboxylata
Pathway
lax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT61_20310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lax03019
]
APT61_20310
03016 Transfer RNA biogenesis [BR:
lax03016
]
APT61_20310
Enzymes [BR:
lax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APT61_20310
Messenger RNA biogenesis [BR:
lax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APT61_20310
Transfer RNA biogenesis [BR:
lax03016
]
Prokaryotic type
tRNA degradation factors
APT61_20310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
MetOD2
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ALZ98232
UniProt:
A0A3E1ZRU3
LinkDB
All DBs
Position
complement(4382314..4384755)
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIEGLKEQVPESAKEGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRTGTPLDGEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRTVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKRGAAGKTSGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARAAKKPSAKSQKIAAATKAKRAAKKNSAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgctaatcctatcccaagc
cgcgagttcatcattgaacacttaactaaacgcgaaaaacccgctaaccgtgaagaactt
gccgttgaattaaacattgaaggcgaagagcagattgaagcccttcgccgtcgtctgcgt
gcgatggagcgcgatggacaactggtctttacccgccgtcagtgctatgccctgccagaa
cgtctcgacttgctgaaaggcatcgtgattggccaccgagatggttttggcttcctgcgc
gtcgaaggccgcaaggacgacctatatctctcctctgaacagatgaagatgtgcatccat
ggcgaccagatcctggcccagccgctgggtgccgatcgtaaaggtcgtcgtgaggcgcgc
gtggtgcgtgtcctggtgccgaaaaccagccagatcgtgggtcgctacttcaccgacgct
ggcgtcggtttcgtggtgccggacgacagccgcctgagctttgatatccttattccaccg
gaagaggtgatgggcgcgcggatgggctttgtggtggtcgttgaactgacccagcgccca
acccgtcgcaccaaagcgatcggtaagattgttgaagtgctgggcgataatatgggcact
ggcatggccgtcgatatggcgctgcgcacccacgaaatcccctacgtctggccaaaagcg
gttgaagagcagattgaaggcctgaaagagcaggtgccggagtcggcaaaagaaggccgc
gtggatctgcgcaacctgccgctggtcaccatcgatggcgaagatgcccgtgactttgat
gacgccgtctactgcgagaaaaaacgtggcggcggctggcggctgtgggtggcgattgcg
gatgtaagctattacgttcgcacaggtacgccgctggatggtgaagcgcgcaaccgtggc
acctcggtatacttcccgtcccaggtcgtgccgatgctgccagaggtgctctccaacggt
ttgtgttcacttaacccgcaggttgatcgtctgtgcatggtgtgtgaaatgaccatctcc
accaaagggcgcttaacgggctacaaattctatgaagcggtgatgagctcacatgctcgc
ctgacctacaccaaagtgtggcacatgctgcagggtgaccaggatctgcgtgagcagtat
gcgccgctggtgaagcacatcgaagagctgcacaacctctataaagtgctggatcaggcg
cgtgaagagcgcggcggcatttcatttgagagtgaagaggcgaagttcatcttcaacgcc
gaacgtcgcatcgagcgtattgaacagacccagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgcggcacgcttcgttgagaaagccaaagagcca
gcgctgttccgtattcacgataaaccgaccacggaagccattacctcattccgtaccgta
ctggcggaactagggcttgagctgccgggtggcaacaagccggagccgcgcgattacgcc
gaattgctggaatccattggcgatcgccctgatgcagaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcgatttacgatccagaaaaccgtggtcacttcggcctggcattg
cagtcttatgcccactttacctcgccgatccgccgttacccggatctttccctgcaccgc
gctattaagtatctgctggcgcaggagcaaggtcataaaggcaacaccacggaaaccggt
ggttaccactactccatggaagagatgctgcaattgggccagcactgttccatggcagaa
cgccgggcagatgaagcaacccgtgacgtagctgactggctgaagtgtgacttcatgctg
gatcaggtcggtaacgtctttaaaggcgtgattgccagcgtcaccggctttggcttcttt
gtgcgtctggatgaactctttattgatggtctggttcatgtgtccagcctggacaatgac
tactaccggtttgaccaggttgggcagcgtctgatcggtgaatctggcgggcaaacctat
cgtctgggcgatcgggtggaagtgaaggttgaagccgtcaacatggacgagcgtaagatc
gacttcagcctgatctccagcgaacgagcgccgcgcaacgtgggtaaaaccgagcgcgag
aaagcgaagagaggggccgccggtaaaaccagcggcaaacgtcgtcaggccgggaagaag
gtgaacttcgagccggacagcgcgttccgtggcgagaaaaaacagaagccgaaggccgca
aagaaagaagccagagccgcgaaaaagccgtcagcgaaatctcagaaaatcgccgccgcg
accaaagcaaagcgcgcagcgaagaaaaatagcgctgagtaa
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