Leclercia adecarboxylata: APT61_21190
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Entry
APT61_21190 CDS
T04232
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lax
Leclercia adecarboxylata
Pathway
lax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APT61_21190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lax03021
]
APT61_21190
03400 DNA repair and recombination proteins [BR:
lax03400
]
APT61_21190
Enzymes [BR:
lax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APT61_21190
Transcription machinery [BR:
lax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APT61_21190
DNA repair and recombination proteins [BR:
lax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APT61_21190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALZ98395
UniProt:
A0A7H0FAI4
LinkDB
All DBs
Position
complement(4577266..4581489)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKAENGELVAKTSLIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
YNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRDLEANGKLSATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEIPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgactgcccacatctggttcctgaaatctctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgtgatatcgaacgtgttctgtac
ttcgaatcttatgtagttatcgaaggcggtatgacgaacctggaacgtaaccagattctg
accgaagaacagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagcgatccaggccctgctgaagagcatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacgtctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcatttgagccagta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccagcgaacggtgagccaatcatt
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgtgtaaaagtgcgtatcaccgaatatgaaaaagctgaaaac
ggcgaactcgttgcgaaaaccagcctgattgacacgaccattggccgtgcgatcctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggtctgaagccgaccgttatcttc
gctgaccagacaatgtataccggctttgcttatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccagagaagaaacacgagatcatctctgaagcggaagccgaa
gttgctgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaaccgaaactgtgattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgctaactccggttatctgacgcgtcgtctg
gtagacgttgcgcaggatctggtggttaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgttctg
ggccgtgtgactgctgaagacgttctgaagccgggtaccgcagatattctggttccacgt
aacacactgctgcacgagcactggtgtgatctgctggaagcgaactctgttgactccgtg
aaagtacgttccgtcgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
tacaacgcgaagtcggttgttaactcttccggtaagctggttgtgacttcacgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gctgttatggcgaaaggcgatggcgaacaggttgctggcggcgaaaccgtagcgaactgg
gatccgcacaccatgccggtaatcaccgaagtggcgggctttattcgcttcaccgatatg
atcgatggccagacgattactcgtcagaccgacgacctgaccggtctctcttccctggtg
gttctggattctgcagaacgtaccgcgggtggtaaagatctgcgtccagcactgaaaatc
gttgatgctaacggcaacgacgttctgatcccaggcaccgatatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaattagc
ggtatcatttccttcggtaaagagaccaaagggaagcgccgtctggtgatcacgccgctg
gatggcagcgatccgtacgaggagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggcgaacgtgtagaacgtggtgacgttgtttccgacggtccagaagcaccgcacgacatt
ctgcgtcttcgtggcgtccacgcggtaacgcgttacatcaccaacgaagtacaggacgtt
taccgtctgcaaggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgtgaatgccggtagctccgacttcctcgaaggtgagcaggtt
gaatactctcgcgtcaagattgctaaccgcgatctggaagcgaacggcaaactcagtgcg
accttcgcacgtgacctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggtgaaatccctgct
gcaccacaggtgactgctgaagacgcatctgccagcctggcagagctgctgaacgcaggc
ctgggcggttctgacaacgagtaa
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integrated database retrieval system
