Lactobacillus amylovorus GRL1118: LAB52_01315
Help
Entry
LAB52_01315 CDS
T01954
Name
(GenBank) ATP-dependent RNA helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lay
Lactobacillus amylovorus GRL1118
Pathway
lay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAB52_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lay03019
]
LAB52_01315
03009 Ribosome biogenesis [BR:
lay03009
]
LAB52_01315
Enzymes [BR:
lay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAB52_01315
Messenger RNA biogenesis [BR:
lay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAB52_01315
Ribosome biogenesis [BR:
lay03009
]
Prokaryotic type
rRNA helicases
LAB52_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AEA31248
LinkDB
All DBs
Position
261666..263159
Genome browser
AA seq
497 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL
QTIDKKEKAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQTLL
FSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTQ
KKMSPLRPPTDAQAFRGQLKQAEAEIEDLMNGDLGKYTQEASELLDNYSALDLVAAFLKN
LSKDSTDVKVKITPEKPLPYKGDGRHHRGGRGKGRNNRGHGNGNYHRRNNHNYRHNGNRG
KRGRGNGHEFIIKNKKD
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttcagaattaggattaaacgatgcgcttcttaaggcaattaaacgctcaggc
tttgaagaagcaactccaatccaggaacaaactattccacttgctttagcgggcaaggat
gtaattggtcaagcgcaaactggtacaggtaagactgctgcttttggtttgccaatttta
caaactattgataaaaaagaaaaagcaattcaagcgatcattattgaaccaacgcgtgaa
ttggctattcagactcaagaggaattattccgtctaggtcgtgatgaacatacccacgta
caagtagtttatggtggagctgatattggtcgtcaaattcgttctttaaagcaccatgta
ccatcaattttagtaggtactccaggacgtttattggatcacttaaagcgtggcacaatc
aatttggacaaagttaaggctgttgttctagatgaagcagacgaaatgcttgatatgggc
tttattcaagatattgaaagcattttgaagtatgccaagaaccgcaagcaaactttgctc
tttagtgcaacgatgcctaagccaatcttacgtattggcgaaaagttcatgaaccatcct
aaaattgttcaaattaaggctaaggaattaactgcagacttaatcgatcaatactttgtt
cgtgccaaagaatcagaaaaattcgacattatgtgtcgtttaatcgatgttcaaggtcca
gacttggctttggtctttggtcgtactaaacgccgcgtagatgagctgacacgtggcttg
caagctcgtggctataatgcagccggtattcacggtgacttgtcacaagctcgcagaatg
gccgtcttgaagcgattccgtgaaggtaagcttgatattttggtagccactgatgtcgct
gctcgtggacttgatatttcaggtgttactcacgtttataactacgatattccgcaagat
ccagattcttacgttcaccgtattggtagaactggtcgtgccggtcaaaacggaatttca
gtaacttttgtaacgccaaatgaaattggctacatgagaaccatcgaacaattaacccag
aagaagatgtcaccacttcgtccacctacagatgcgcaagctttccgtggtcaattgaag
caagctgaagctgaaatcgaagatttgatgaatggtgatttgggcaagtacacgcaagaa
gctagtgaactgcttgataactactcagcacttgatttggttgcagccttcttgaagaat
ctttctaaagattctactgacgttaaggttaagatcaccccagaaaagccacttccatac
aagggagatggtcgtcaccaccgtggcggtcgcggcaagggacgcaacaatcgtggacat
ggcaatggtaattatcatcgtcgcaacaaccacaactatcgtcataatggcaatcgtggt
aagcgcggtcgtggcaatggtcatgaatttattatcaagaataaaaaagattaa
DBGET
integrated database retrieval system
