Lactobacillus amylovorus GRL1118: LAB52_01410
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Entry
LAB52_01410 CDS
T01954
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lay
Lactobacillus amylovorus GRL1118
Pathway
lay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAB52_01410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lay03021
]
LAB52_01410
03400 DNA repair and recombination proteins [BR:
lay03400
]
LAB52_01410
Enzymes [BR:
lay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAB52_01410
Transcription machinery [BR:
lay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAB52_01410
DNA repair and recombination proteins [BR:
lay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAB52_01410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEA31267
LinkDB
All DBs
Position
287366..291019
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFVAKMGAEAIRDLLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVSGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADSMPKKPWPKGHEHGIFITTYGKIVFNQLFPDDYFYINEPTEKNLNNPLDAKYFLDEGE
DIKDRIDKVADYLIASPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMNDVPEIHDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIREDDCGTDRGITVSAIMEGDELIE
PLFDRLLGRFTAETVKDPKTGEAIVGKDVMMDEAMAHKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATVSEVDGVVDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVAEG
DTVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDISDKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRSMEPEADVKKPDSV
YSIADIEKQMKEKDKAK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagccagagaccatcaactaccgtactttaaag
cctgaaaaagatggcttgtttgatgaaagaatttttggaccaacaaaagattggtcatgt
gcttgtggtaagtacaagggtgttagataccgcggcatagtttgtgatcgttgtggcgtt
gaagttacttcttcaaaggtaagaagagaacgtatgggtcacatcgaattagcagctcct
gtaactcatatttggtacttcaaaggtattccatcaagaatgggtttggtattggatatt
tctccaagattgcttgaagaagtaatttactttgctgcatacatcgtaattgacccaggt
gatactgatcttgaacctaagcaattattaactgaagctgaatatcgtgaacaaaaggca
aaatacggtaatcgctttgtagctaaaatgggtgctgaagctatccgtgatttgcttaag
aaggttgaccttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaagcgtactcgtgcaatcagacgtttggatattttggatgcattcaagaactcaggc
aacaagcctgaatggatggttatggatgctgttccagttatcccaccagatcttcgtcca
atggttcaacttgaaggtggacgtttcgcaacttcagatttgaacgatttgtacagacgt
gttattaaccgtaataaccgtttgaagagattgcttgatttgaacgctccaaacatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgacaacggtcgt
cgtggtcgtccagttgtaggaccaggtaaccgtccacttaagtcactttcacacatgctt
aaaggtaagcaaggtcgtttccgtcaaaacttgcttggtaagcgtgtagactactcaggt
cgttcagttatcgatgtttcaccaaaattgaagttctatcaatgtggtgttcctcgtcca
atggctttggaattgttcaaaccatttgtaatgcacgaattggttaagcgtggtattgct
tctaacattaagaatgctaagcgtaagatcgatcgtgaagatgacgatatctgggatgta
cttgaagatgttattaaggaacgtccagttcttttgaaccgtgcccctactcttcaccgt
ttgagtatccaagcctttgaaccagttttggtatcaggtaagtcaatcagacttcaccca
ttagcttgtgaagcttacaacgccgacttcgatggtgaccagatggccatccacgttcca
ctttcagatgaagctgttgctgaatcacgtttgcttatgcttgcagctcaccacatcttg
gctcctaaggatggtaagccaatcgttactccatcacaggatatcgttttgggtaactac
tggttaactcaagctgaacgtggtcgtgaaggtgaaggcatgatcttcagttcaccagca
gaagcaactgtagcttacgaaaatggtgacattcactaccatactattattggtatgtca
gcagattctatgcctaagaagccatggcctaagggacatgaacacggtatcttcattacc
acttatggtaagatcgtcttcaaccaattgttcccagatgactacttctacatcaatgaa
ccaactgagaagaatttgaacaatccattggatgctaagtacttcttagacgaaggtgaa
gacattaaggacagaatcgataaagttgccgattatttgattgctagtccattcaagagt
agcttcttatcagattctattgctactatctacaagtactacaaggttcaaagaacttca
gaatacttggatgacttgaagaagttaggttatactagttcaactacttcaggtattact
attggtatgaacgacgttcctgaaatccacgataaggatgaaaaggtagctaaggcacgt
aagcaagttgatattgtttctaagcaattcagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaatgcatgtaaggatgaaatccaaaacgaaattgct
caaattcactcacctcgcaacccaatttcaatcatggccgactcaggtgcccgtggtaac
atttctaactttactcagttagccggtatgcgtggtttgatggctactccaaacggtggt
ttgttcgaaattccagttacctcaaacttcaaggaaggtttgtctgtgcttgaattgttc
atgtccactcacggtgctcgtaaaggtatgactgatactgctttgaagactgctcagtca
ggttacttgactcgtcgtttggttgatgttgctcaggatgttattatccgtgaagacgat
tgtggtactgatcgtggtattacagttagcgccatcatggaaggtgacgaattaatcgaa
ccattatttgaccgtttacttggtcgttttactgctgaaactgttaaggatccaaagacc
ggtgaagctatcgttggtaaagatgtcatgatggacgaagctatggctcacaagatttgt
gatgctggtgtaactcacgttaagattcgttcaattcttacctgtgatactcctcacggt
gtatgtcgcaagtgttacggtatgaaccttgctactggtgaagaagttgaggtcggtgaa
gcagttggtactgttgccgcacaatcaattggtgaaccaggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgctgaagatattactcaaggtttgcctcgtgtt
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccgtttctgaagtagatggt
gtagttgattcaattcaagaaaacccagcagaacatactcgtgaaatcacagttaagggc
aagattgatactagaagttacagtgttccttacactgcctctgttgccgtagctgaaggc
gatactgttcaccgtggtgataagttgactcttggttctgttgaccctaaggaattgatc
caagtaactgatactttgactactgaaaagtacatcttagctgaagttcaaaaggcctac
agaatgcagggtgtagatatttctgataagcacgtcgaagtattgactcgtcaaatgctt
caaaaggtacgtgtacttgacccaggtgaaactgacatcttaccaggtgaagtaatggat
atcggtcaatttagagaccgcaacaaggaagtaatcatttctggtggtattccagcaact
gcacaaagcgtaatcttaggtattactaaggccgctttggaaactaacagtttcttgtca
gctgcttcgttccaggaaactactcgtgtgcttactgatgcttcaatcagaggcaagaac
gacccacttcttggacttaaggaaaacgttattatcggtaagattattccagctggtact
ggtatgcctgtataccgcagcatggaacctgaagctgatgtaaagaagccagattcagtt
tactcaattgctgatatcgaaaaacaaatgaaagaaaaggacaaggctaagtaa
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integrated database retrieval system
