Lactobacillus amylovorus GRL1118: LAB52_02035
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Entry
LAB52_02035 CDS
T01954
Name
(GenBank) RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lay
Lactobacillus amylovorus GRL1118
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lay03019
]
LAB52_02035
03009 Ribosome biogenesis [BR:
lay03009
]
LAB52_02035
Enzymes [BR:
lay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAB52_02035
Messenger RNA biogenesis [BR:
lay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAB52_02035
Ribosome biogenesis [BR:
lay03009
]
Prokaryotic type
rRNA helicases
LAB52_02035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DsrH
Motif
Other DBs
NCBI-ProteinID:
AEA31390
LinkDB
All DBs
Position
388345..389706
Genome browser
AA seq
453 aa
AA seq
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MNNIFEDSRIKPAVQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVP
IFNEIDEAAHTVQAIITLPSRELADQLYQVARELRKASGMNFSIAHLAGGTDRERQLEKY
QNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLADIDQVAAKLPKDV
QIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLIDIGSKNRKSVLYKLLT
MGQPYLALVFANTKQTVDELTKYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVA
SDLAARGLDIDGISLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRIEELE
KMGVHFDFVEIKNGELVPRKHYRSRENRQSKNRKLDTKLVGYVKKEKRKRKPGYKKKIKR
AIAEDNRQKRKLEQRHEIRKAKRQRKRRREQGR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaataatatttttgaagattccagaattaagcctgccgttcaagccggtttaaagaag
atccactttgaaaagccaactaaggtgcaggaaaaggttattcctgcaatgctttctgat
ttaagcgtagtagttcaagctgctacaggatcaggtaagacgcatgcatatttggtgcca
atttttaatgaaattgatgaagctgctcatactgtgcaagcaattattactttgcctagt
cgtgaattagctgatcaactttatcaagtagcacgtgaacttagaaaagcttcagggatg
aacttttcaattgctcacttggctggcggaactgacagagaacgtcaacttgaaaagtac
caaaataatacgccacagttagtaattgcgacacctggtcgacttttggactttgtacaa
aagaaggtttttgcagtagatcaagtgaagacctttgtcatcgatgaagctgatatgacg
ttagacatgggctttttagcagatatcgatcaagtagccgctaagttgcctaaggatgtt
caaattgcagccttctcagctacaattccagttaagttgtctaactttttgcgtaaatac
atggctcaccctgaccaaatcgtcattgataacccaagcgtaattgcaccaacgattaag
aatgacttaatcgatattggttctaagaaccgcaagagcgttttgtacaagttgcttacg
atgggccaaccatatttggctttagtctttgccaatactaaacaaaccgttgatgaattg
accaagtacttgcaagatcaaggcttaaaagtagccaagattcacggcggagttaccgaa
agagaaagaaaaagaactctgcgtcaggttgaacaaggtcaatatcaatacgttgtagcc
agcgatttggccgctcgtggcctagatatcgatgggattagtttggtcattaactacgaa
attccacgtgatattgaattcgttattcaccgaattggtagaactggtcgaaatggttta
tcaggtcatgctattaccttgattcgtgaagaagaaatgaaccgcattgaagaacttgaa
aagatgggcgttcactttgactttgtcgaaattaagaatggcgaacttgtaccacgtaag
cactaccgcagtcgtgaaaatcgtcaaagcaagaaccgcaagcttgataccaagttagtt
ggctacgttaagaaagaaaagagaaagcgtaagccaggctacaagaagaagatcaagcgt
gcaattgccgaagacaatcgtcaaaagcgcaagcttgaacaacgtcatgaaattaggaaa
gctaaacgacaaagaaaacgtcgtagagagcaagggcgttga
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