Lactobacillus amylovorus GRL1118: LAB52_03395
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Entry
LAB52_03395 CDS
T01954
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lay
Lactobacillus amylovorus GRL1118
Pathway
lay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAB52_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lay03400
]
LAB52_03395
DNA repair and recombination proteins [BR:
lay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAB52_03395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAB52_03395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
nSTAND3
AAA_23
nSTAND1
AAA_29
AAA_22
AAA_33
DnaJ_CXXCXGXG
AAA_15
AAA_25
AAA_21
nSTAND6
BCA_ABC_TP_C
Viral_helicase1
RNA_helicase
NACHT
SLFN-g3_helicase
MMR_HSR1
Mtrc-MtrF_II-IV_dom
cobW
DUF1924
Aq_aa27
T2SSE
Septin
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEA31653
LinkDB
All DBs
Position
676159..678999
Genome browser
AA seq
946 aa
AA seq
DB search
MANDKIVIRGAREHNLKDINLTIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVQSLS
SYARQFLGQMDKPDVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTLIERQSVDQMVDRIMALPERTKIQLLAPVVRAKRGEHKEVFKRVQRAGYVRVI
VDGEMHEIGEEFNLEKNKRHSIDIVVDRLIVKDSIKSRLFDSVEAALRLSDGYMNVDVIG
GEMMNFSEYYACPKCGFTVGEMEPRLFSFNAPFGACPDCDGLGVKLAVDEDLVVPDKSLT
LAEGALAPWKTSNYYSEMLEQACTALKIPMDKPFNKLTKRQRDIVLHGSTKSVKFHVTGD
FGVNDTTQPFEGVMANVERRYRRPMSKFMRDVMGKYMTELTCATCHGKRLNEKALAVKVM
GKDIAEASDLSINKALAFFKSVKFSEQETVIAKPILKEVKDRLSFLDSVGLDYLTLSRSA
NTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKRMRDLGNSLIVV
EHDDETMRQADYLVDMGPGAGVYGGKVMAQGTPEEVEKNPNSLTGQYLSGKKFVPVPLKR
RKGNGKFITITGAQENNLKNIDVKFPLGKFIVVSGVSGSGKSTLVNMILKRALAQKLNNN
STKPGKYKSIKGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKMRGY
TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGSRYNSETLEVTYRGKNIA
QVLNMTINEACKFFENIPKIQRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAAELQK
LSTGKNFYILDEPTTGLHTDDIKRLLKVLQRLVDEGNTVLIIEHNLDVIKNADWLIDLGP
EGGDGGGQVVATGTPEEVAQVKESYTGQYLKPVLERDTKLTEEAQK
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgataaaattgttattcgcggtgcacgtgaacataatttaaaagatattaat
ttaaccattcctaaagacaagttagtagtaattaccggtttgtctggttctggtaaaagt
tctttagcatttgatacgttgtatgccgaaggtagacgtcgttatgtacaatcactgtct
agttatgctagacaatttttgggccaaatggataagccagatgttgattcaatagatggc
ttaaatcctgctatttcaattgaccaaaagactacttcacataaccctcgttcaactgta
ggaacggttactgaaattaacgattatttgcgtcttctttgggctagagtgggtcaccca
atttgtcctaatgatggcactttaattgaaagacaatccgttgatcaaatggttgatcga
attatggcgctgcctgaaagaaccaagattcaattactagctcctgtagttcgtgctaaa
cgcggtgaacataaggaagtcttcaagcgagttcaacgtgccggatatgtccgtgtcatc
gttgacggcgaaatgcatgagattggcgaagaatttaatcttgagaaaaataagcgtcac
tcaatcgatatcgtggttgaccgtttaatcgttaaagacagtattaagtctcgtttattt
gattcagttgaagccgcattgcgtttgtcagatggttacatgaacgttgatgtcattggc
ggcgaaatgatgaacttctctgaatactatgcttgtcctaaatgtggttttacagttggt
gaaatggaaccaagattgttctcatttaatgcgccatttggtgcttgtcctgactgtgat
ggcttaggagtaaagcttgccgttgatgaagatttggttgttcccgataaaagtctgact
ttagctgaaggggcacttgctccatggaagacttctaattattattcagaaatgcttgaa
caagcttgtaccgcattgaagattccaatggacaagccatttaataaattaactaagcgt
caaagagacatcgttttgcatggttctactaaatcggtaaaattccatgttactggcgat
tttggtgttaatgatacaacgcaaccattcgagggcgtaatggctaatgttgaacgacgc
tacagacgaccaatgtctaaatttatgcgtgacgtaatgggcaagtacatgactgaatta
acctgtgctacttgtcatggcaagcgtcttaatgaaaaggcattggcagtcaaagttatg
ggcaaggatattgccgaagcttcagatttgtctattaataaagcattggcattctttaag
agcgtaaagtttagcgaacaagaaactgtgattgccaagccaattctaaaagaagtaaaa
gatcgtctttcattcttggatagtgttggacttgattatttgaccctttctcgttcagcc
aatactttgtctggtggagaagctcagagaattcgtttggctacgcagattggttctaac
ttgtctggtgttatgtatgtcttagatgaaccttcaattggtttgcaccaacgtgataat
gatcgtttgattgcatcacttaaacgcatgcgcgatttaggcaattcactgattgtggtt
gaacacgatgatgagactatgcgccaagccgattatttggtagatatgggaccaggtgcc
ggtgtctatggtggtaaagtgatggcacaaggtacgccagaagaagtagaaaagaatcct
aattcactaacaggtcaatatctttctggtaaaaagttcgtgccagtgccattaaaacgt
cgtaagggcaacggcaaatttattacaattactggcgcacaagaaaacaatttaaagaat
attgatgttaaattcccattaggtaaatttattgtagttagtggcgtgtctggttcaggt
aaatcaactttagttaatatgattttgaagcgagctttagcacagaaactaaataataat
tccactaaacctggtaaatataagtcgatcaaaggttacaagaatatcgaaaagattatt
gatattgatcaaagtccaatcggtagaactcctcgtagtaaccctgcaacttataccagt
gtctttgatgatattagaacgctttttgctcaaaccaatgaagcaaagatgcgtggttat
accaaggcacgtttctcattcaatgttaaaggcggacgttgtgaagcctgtcacggtgat
ggtatcattaaaattgaaatgaactttttgccagatgtttatgtaccttgtgaagtgtgc
catggcagcagatataattcagaaacacttgaagtaacctaccgtggtaagaatattgct
caagtgctgaatatgacgatcaatgaagcatgcaagttctttgaaaatatccctaagatt
caacgcaagttgcaaacgattgtcgatgtaggtttgggctatgttaaattaggtcagtct
gctacgacactttctggtggcgaagctcaaagaatgaagttggccgcagaactgcaaaaa
ttatctaccggtaaaaatttctacattcttgatgaaccaactactggtttgcatacagat
gatatcaaacgcttgcttaaagtattgcaacgcttggttgatgaaggaaacaccgtttta
atcattgaacataatcttgatgtaattaagaatgccgactggttaatcgacttaggtcct
gaaggcggtgatggtggtggtcaagttgttgccacaggtacaccggaagaggtcgctcaa
gttaaggaaagctatactggtcaataccttaagccagtactcgagcgtgatacgaagtta
accgaagaagcgcaaaaataa
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