Lactobacillus amylovorus GRL1118: LAB52_06380
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Entry
LAB52_06380 CDS
T01954
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lay
Lactobacillus amylovorus GRL1118
Pathway
lay03410
Base excision repair
lay03430
Mismatch repair
lay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAB52_06380
03430 Mismatch repair
LAB52_06380
03440 Homologous recombination
LAB52_06380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lay03400
]
LAB52_06380
DNA repair and recombination proteins [BR:
lay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LAB52_06380
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LAB52_06380
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAB52_06380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEA32205
LinkDB
All DBs
Position
complement(1240494..1242767)
Genome browser
AA seq
757 aa
AA seq
DB search
MKWQQRTAEELDPSLIEKYQLSPIAAKLFALRGIDSDEKLDFWFNATEENLADPSLMHDM
DKAIDRINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYGPN
IDRYHDIVADGTKLIITVDNGVTGIDEVKYAKEHGVDTIVTDHHTFQEQKPDAYAIVHCN
YPGQKYPFDDYCGAGVAYTICRGLMQDTMPELLDLAMIGTIGDMVKVTGEGHVIVKRGLE
VLNQTERPGLRALIKNAGLTLGSINETDIAFNIAPRLNAVGRLANANLAVELLLSDDDVE
AQKIADQIEELNNQRKELTTEVYDKCMALIRENSWQKQNTLVLYDPDFHEGVLGLVANKI
VEKTHKPTIVLTKNQAGEIKGSGRSITGFNLFDALNPLKEELFTKFGGHDFACGLSMTED
KIGALREKLEKGFHVEGGLEIKEYDMELPLQGLSPQTLAQINQVGPFGTGDAQPIFSISN
PTITQFFKIGKEKNHVKFNVAKKGGSLAVIGFNKDFLNNNLLPFIARVFVQLSLNTYRNK
ISLQGIIEGIEFASPKLAVPTPVIDLRQEKLVMGFADRYLLFDKKNIPIVRNRLQVSDDK
ISLVKDYDKSGETVALLDVPRNQIELNSALEKNYQQIYLRFLLDQLPVEHIPAKSYFGKV
LKYIYAHPTLSPDDYRTVAPYLGLDYDSVLFILRVFFELGFVKLDDGKLVGEQHPQKQPL
TASKYLRATQSQIKFVDQLRTMPTQQIITYVNNFLNN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaacaaagaactgctgaagagctagatccaagtttgatagaaaagtatcag
ctaagtccaattgcggcaaagctttttgccttacgtggcattgacagcgatgaaaaacta
gatttctggtttaatgcgaccgaagagaatttagcggatccttcgcttatgcatgatatg
gataaggccattgatcgaatcaatcaagcaattgataatggtgaaaagattacgatttat
ggcgactatgatgctgacgggatcactgcgacaacgattatgacagagactctaagtatt
ttaggtgctgatgtgcattactttattccagatcgctttaaagacggctatggccctaat
attgatcgctatcatgatattgttgcagacggtaccaaattaattattactgtagataat
ggtgtgactggtattgacgaagttaaatatgctaaagaacatggtgtagatacaatcgta
accgaccaccacacttttcaagaacaaaagccagatgcctatgccatcgtacactgtaat
tatcctggccaaaaatatccttttgatgattattgtggtgcaggtgttgcctacacaatc
tgccgcggcttaatgcaggatacgatgccagaactacttgatttagccatgataggtacg
attggcgatatggttaaagtaaccggagaaggtcacgtaattgttaaacgagggctggaa
gtacttaaccaaactgagcgaccaggtttgcgtgccctgataaagaatgctggcttaact
ttaggctcgattaacgaaacagatatcgcctttaatattgctcctcgtttgaatgcggta
ggtagattggccaatgctaaccttgcagttgagttattattaagcgacgacgatgttgaa
gcacaaaagattgcggatcaaattgaagagctgaataatcagcgtaaggaattgacgact
gaagtctatgataaatgtatggcgttaatccgtgagaatagctggcaaaaacaaaatacg
cttgttttatatgatccagattttcatgaaggtgtgttgggcctggtagccaataagatc
gttgagaagacgcataagccaacgatcgttttaactaagaatcaggctggagaaatcaaa
ggttcaggtagatcaattactggctttaatttgtttgatgcccttaatcctttaaaagaa
gagctttttaccaaatttggtggtcatgattttgcctgcggtttatcaatgactgaagat
aaaattggtgctttaagagaaaagcttgagaaaggttttcacgttgaaggtggacttgaa
attaaggaatatgatatggaactgcctttgcagggattgtcaccacagaccttagcgcag
attaatcaagtgggaccgtttggaacgggggatgcacagccaattttcagtatctccaac
ccaacgattacccaattttttaagattggtaaagagaagaatcacgtcaagtttaatgtc
gctaaaaagggtggcagcctggctgtaattggttttaataaagactttttaaacaataat
ttgttgccatttattgccagggtctttgttcaattgtcgcttaatacttatcgcaataag
atatcgttgcaaggtatcatcgaaggaattgaatttgcttcacctaaattagctgttcct
acgccagttattgatttgcgtcaagaaaagctagtcatgggttttgcagatcgttatttg
ttatttgacaaaaagaatattccaattgttaggaatagactgcaagtaagtgacgataag
attagtttggttaaagattacgacaaatctggtgaaacagttgctttgcttgatgtacca
cgcaatcaaatcgaattaaattcggcactagaaaagaattaccaacaaatttacttacgt
ttcttgcttgatcaattgccagtagagcatattccagcaaaaagctattttggcaaagtg
ttgaaatatatttatgctcacccaacgttgagtccagatgattatcgcaccgtagcgcca
tatcttggcttagattatgacagtgtattgttcattttacgtgtcttctttgaattaggc
tttgttaaattggacgatggcaagctagtaggcgagcagcatcctcaaaagcagccttta
acagcatctaagtatttgagagcaacgcagtcacaaattaagtttgtcgatcaattgaga
acaatgccaactcagcaaattattacatatgttaataattttttgaataattag
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