Lactobacillus amylovorus GRL1118: LAB52_07805
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Entry
LAB52_07805 CDS
T01954
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lay
Lactobacillus amylovorus GRL1118
Pathway
lay03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAB52_07805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lay03400
]
LAB52_07805
Enzymes [BR:
lay01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LAB52_07805
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LAB52_07805
DNA repair and recombination proteins [BR:
lay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LAB52_07805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_8
Zn_ribbon_IS1595
NFACT_N
Zn_ribbon_TFIIB
Zn_ribbon_6
Auto_anti-p27
Zn_Ribbon_TF
DZR
Zn_Tnp_IS91
DUF7573
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
AEA32480
LinkDB
All DBs
Position
complement(1520278..1521108)
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AA seq
276 aa
AA seq
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MPEMPEVETVRRTLTPLIKGKTIEKVILWYPKIVATDHDKFINELPGKKIIRIDRYAKYL
LIRLSDNLTIVSHLRMEGKYHLTTPEAPKDKHDHVEFIFTDGTALRYNDVRKFGRMQLVL
TGTERQTTGIGKLGVEPNTPEFSEQYFLSSLKRKKKNIKNVLLDQTVVAGLGNIYVDETL
WQSKIHPLSLANKIPADKVEDLRKNINETIKIATEKRGTTVHSYLDANGEVGGYQKMLQV
YGHAGEACPRCGTTFEKIKVSGRGTTFCPHCQVIYK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaatgcctgaagttgaaactgttcggagaactttaactcctttaattaaagga
aagacaattgaaaaagtaattctatggtatccaaaaatcgttgcgacggaccatgacaag
tttatcaatgaactgccaggcaaaaagattattcgcatcgaccgctatgccaagtattta
ctgattcgcttgagtgataatttgacgattgtgtcgcacttgcgcatggaaggaaagtat
cacttaactacgccggaagcgcctaaagataagcatgatcatgtggaatttattttcact
gacggtacagccttgcgttataacgatgtgcgcaaatttggccgtatgcagctagttttg
accggaaccgagcgccaaacaactggcatcggtaaactgggcgttgaacccaatacgccg
gaatttagtgagcagtattttttgtctagcttaaagagaaaaaagaagaacatcaaaaat
gtcttactcgatcaaactgttgttgcaggtttaggcaacatttatgtggatgaaactttg
tggcaaagcaagatccatcccttgagtttagctaacaaaattcctgccgataaagtagaa
gatctgcgtaaaaacattaatgaaaccatcaaaattgccacagaaaaacgcggcaccacc
gttcacagctatctagatgccaacggagaagtcggtggctaccaaaagatgctacaagtc
tacggccacgctggtgaagcctgccctagatgtggcacgacttttgagaaaattaaagtt
tcaggcagaggcactactttttgcccacattgtcaggtgatttataaatga
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