Lelliottia amnigena: A8A57_01205
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Entry
A8A57_01205 CDS
T04400
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
laz
Lelliottia amnigena
Pathway
laz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
laz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A8A57_01205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laz03021
]
A8A57_01205
03400 DNA repair and recombination proteins [BR:
laz03400
]
A8A57_01205
Enzymes [BR:
laz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A8A57_01205
Transcription machinery [BR:
laz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A8A57_01205
DNA repair and recombination proteins [BR:
laz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A8A57_01205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SPEF2_D5
Motif
Other DBs
NCBI-ProteinID:
ANG91079
LinkDB
All DBs
Position
255143..259366
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEKECEQLREELNETNSETKRKKLTKRIKLLEAFVLSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVANTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGVSVGIDDMVIPAKKTEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVVNRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVTRNTLLDEQWCDLLELNSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIQVKNKGSIKL
SNAKSVTNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
LDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEITGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESTGSSDFLEGEQVEYSRVKIANRDLEANGKVAATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgaa
cgcatgggccacatcgagctggcgtctccaacggctcacatctggttcctgaaatcactg
ccgtcccgtatcggtttgctgctggatatgccgctgcgtgatatcgaacgtgttctgtac
ttcgaatcatatgttgtgatcgaaggcgggatgacgaatctggaacgtaaccagattctg
accgaagaacagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggagaaagagtgcgagcag
ctgcgtgaagagctgaacgaaacgaattccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgtcctgtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccactggtaccgctggatggtggtcgtttc
gcgacgtctgacctgaacgatctgtatcgtcgcgtcatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgcctgacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtcgatgctctgctggacaacggtcgtcgcggtcgtgcaatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccattc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaaccggtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggcagtacacgttccactgacgcttgaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgtctggccctaaagaagctgagcgtatctatcgcgctggc
ctggcctcactgcatgcgcgtgtcaaagtgcgtatcactgaatatgaaaaagacgctaac
ggtgaattcgttgcgaacaccagcctgaaagacacgaccgttggccgtgcgattctgtgg
atgatcgtaccgaaaggcttaccttactccatcgtcaaccaggcgctgggcaagaaagcc
atctccaagatgctgaacacctgttaccgtattttgggcctgaagcctacggtaatcttt
gctgaccagacaatgtacaccggctttgcttatgcagcgcgttcaggtgtctctgttggt
attgatgacatggtcatcccggcgaagaaaacggaaatcatctctgaagcagaagctgaa
gttgctgaaatccaggaacagttccagtctggtctggtcaccgcaggtgaacgttacaac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtggttaaccgcgacggcgtagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggctaactccggttatctgactcgtcgtctg
gttgacgtcgcgcaggatctggttgtcaccgaagatgactgtggcacgcacgaaggcatt
ctgatgactccggtcatcgaaggtggcgacgtgaaagagccactgcgcgaccgcgttctg
ggtcgtgtcacggctgaagatatcctgaagccgggtacagcggatatcctggtaacacgt
aacaccctgctcgatgagcaatggtgtgacctgttagaactcaactctgttgatagcgtg
aaagtacgttccgttgtaggttgcgaaaccgacttcggcgtgtgtgcacactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagccatcggggttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgttctgctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttacaaactctgccggtaaactggtcgtgacttctcgtaatacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtaccttacggt
gcagtcatggcaaaaggtgatggcgagcaggttgctggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccagttatcaccgaagtgggtggctttattcgcttcacggatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggcttgtcatctctggtg
gttctggattctgcagaacgtaccgcaggtggtaaagatctgcgtccagcactgaaaatc
ctcgatgccaacggtaacgacgttctgatcccgggcaccgatatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgtacagatcagcgcgggtgacacg
ctggctcgtattccacaggaatccggcggtaccaaggacatcacgggtggtctgccacgc
gttgctgacctgttcgaagcacgtcgtccgaaagagccagctatccttgcggaaatcacg
ggtatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcactccgtta
gacggtagcgagccatacgaagagatgattccaaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgatgtggtttccgatggtccagaagcgccgcatgacatt
ctgcgtcttcgtggtgttcacgcggttacgcgttacatcaccaacgaagttcaggacgtt
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaagcactggcagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgttaagattgccaaccgcgatctggaagcgaacggcaaagtggcggca
acctatgctcgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatccttccaggagacaacgcgtgtcctgaccgaagccgctgttgcaggtaaa
cgtgatgaattgcgcggtctgaaagagaacgtcatcgtgggtcgtctgatccctgccggt
accggttatgcgtaccatcaggatcgtatgcgtcgtcgtgcagcgggcgaactgccagcc
gcaccgcaggtcactgctgaagatgcatccgcgagcctggcagaactgcttaacgcaggt
ctgggcggttccgacaacgattaa
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