Lelliottia amnigena: A8A57_20680
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Entry
A8A57_20680 CDS
T04400
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
laz
Lelliottia amnigena
Pathway
laz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8A57_20680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laz03019
]
A8A57_20680
03400 DNA repair and recombination proteins [BR:
laz03400
]
A8A57_20680
Enzymes [BR:
laz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8A57_20680
Messenger RNA biogenesis [BR:
laz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8A57_20680
DNA repair and recombination proteins [BR:
laz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A8A57_20680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ANG94695
LinkDB
All DBs
Position
complement(4431307..4433136)
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AA seq
609 aa
AA seq
DB search
MAQAEVMNQESLAKQVLHETFGYQQFRPGQETIIDTVLEGRDCLVVMPTGGGKSLCYQVP
ALVLNGLTVVVSPLISLMKDQVDQLLANGVAAACINSTQTREQQQEVMAGCRNGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRLDIVRLLGLNDPFIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIGRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGKEQSHEHWVSIIRQLIHLG
FATQNIAQHSALQLTEAARPVLRGEIELQLAVPRVVALKPRVMQKSYGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSAGEMLSVNGVGTRKLERFGKEFMALIR
SHADGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtaatgaatcaggaatcgctggctaaacaggttctacacgaaacc
tttggctatcagcaattccgccctggccaggaaaccatcattgacaccgtgctggaaggc
cgcgattgcctggtggtgatgccaaccggcgggggaaaatccctgtgctatcaggtgccc
gcgctggttcttaacggcctgacggttgtggtgtcaccgctgatatccctgatgaaagac
caggtggaccaactgctggcaaacggcgtggccgctgcctgcattaactccacgcaaacc
cgggaacagcagcaggaggtgatggcaggctgccgtaacgggcaaatccgcctgttgtat
atcgcccctgagcggctgatgctggataacttcctcgagcatttagcccactggaacccc
gtgttactggcggtggatgaggcgcactgtatctctcagtggggacacgatttccgcccg
gaatatgccgcgctgggccaactgcgccagcgttttcctgccttgccctttatggcgctg
accgccaccgccgatgacaccacgcgtcttgatattgtccgtctgcttggactgaacgat
ccctttatccaggtcagcagcttcgaccgacctaacatccgctatatgctgatggaaaag
ttcaagcctctggatcagcttctgcgatacgtccaggaacaacgcggcaagtccggtatt
atctactgtaacagccgcgcgaaagtggaagacaccgccgcacgtctgcaaaacagaggc
ttcagcgcagcggcgtaccatgccgggctggagaatcatattcgcgccgacgtgcaggaa
aagttccagcgcgacgatctgcaaatcgtggtcgccaccgtggcgtttgggatgggcata
aacaagcccaacgtccgctttgtggtgcatttcgatattccgcgcaatatcgaatcgtac
tatcaggaaacgggtcgtgccgggcgtgacggcctgccagcggaagcgatgctgttctac
gatccggccgatatggcctggctgcgccgctgcctcgaagaaaaaccggccggacagctg
ctggatatcgaacgccacaagctcaacgccatgggggcctttgccgaagcgcaaacctgc
cgtcgcctggtcttgctcaattactttggggaagggcgccaggagccgtgcggtaactgc
gatatctgcctcgatccgccaaagcagtacgatggccttatggacgcgcgtaaagcgctc
tctaccattggacgcgtcaaccagcgctttggcatggggtatgtcgtggaagtgctgcgg
ggggccaacaatcagcgtatccgcgagatgggccatgataagttgccggtctacggtatc
ggtaaagagcagagccacgagcactgggtaagcataattcgccagctgatccatctgggg
ttcgccacgcagaatatcgcgcaacactctgcgctacagctgactgaagcggcgcgtccg
gtattacgcggtgaaattgaactccagctcgccgtgccgcgcgtcgtggcgctaaaaccg
cgcgtgatgcagaaatcctatggcggcaactacgatcgcaagctgtttgccaagctgcgt
aaactgcgtaaagccattgccgacgaagagaacattccgccatacgtggtgttcaacgat
gcaacgcttatcgaaatggccgaacaaatgccgctcagcgcgggcgaaatgctcagcgtt
aacggcgttggaacgcgcaagctggagcgttttggcaaagagtttatggcgctgatccgc
tctcatgctgacggcgatgatgaggagtag
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