Leptotrichia buccalis: Lebu_1890
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Entry
Lebu_1890 CDS
T00975
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lba
Leptotrichia buccalis
Pathway
lba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lebu_1890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lba03021
]
Lebu_1890
03400 DNA repair and recombination proteins [BR:
lba03400
]
Lebu_1890
Enzymes [BR:
lba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lebu_1890
Transcription machinery [BR:
lba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lebu_1890
DNA repair and recombination proteins [BR:
lba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lebu_1890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Biotin_lipoyl
RnfC_N
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
ACV39755
UniProt:
C7NC74
LinkDB
All DBs
Position
complement(1997811..2001872)
Genome browser
AA seq
1353 aa
AA seq
DB search
MSIRDFDSIQIKLASPEKILEWSYGEITKAETINYRTLKPEMDGLFCERIFGPSKDYECA
CGKYKRMRYKGMVCEKCGVEVTTSKVRRERMGHIKLATPIAHIWYSKGTPNKMSLLLGIS
TKELESVLYFSRYIVTDPGETGLQKGEILTEREYKLQESQFKNEFTAKMGAEGVLALLEE
IDLLELEKKLQNEMDTEHSTQKRRKVIKRLKIVRDLIEAGNRPEWMIMTVLPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNIRLKKLMSIKAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVTQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKK
MALELYKPFLMRELVKRELASNIKVAKKMVEEEDENVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFEPILIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSQEAQMEAKLLMLATNNII
APSSGRPIAVPSQDMVMGCYYMTKERKGVKGEGKSFSNKNQLITAYQNGQVAVHALVNVR
IDGQTIQTTPGRLMFNTMLPKEVRDYTKTFGKGELGKLIAGLYKKFGFEKTSALLDKIKE
FGFHYGTLAGITVGIEDLEIPESKKTILEKAENEVAEIEEQYKAGEIIDAERYRRTVAIW
DEAVSKVTKDMMDNLDEFNPVYMMANSGARGSIAQMRQLGGMRGLMADTQGRIIEMPIKA
NFREGLNILEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNHDDCGCEHGIV
VSDLMDAGEVIEKLSERIYGRNLATDLIHNGELIAKRNTLITDDLIKKIEELDIREVEIR
TPLTCKLEKGVCKKCYGLDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVATA
ASVQSDAKADVSGKVKFRDITTLVNEEGKEIVVSQNGRVIIGKHRYEVPSGSALHVKDGD
TVEKGQVLVEFDPYQIPIITSEEGKVEFRDIYVRENIDVKYGVTEKVAIKPVESNDVNPR
IIIYTKDNRRVEYAVPYGAYLMVNEGDTVKKGQVITKILKTGEGNKDITGGLPRVQELFE
ARNPKGKAILSEFAGRVVFSDKKKKGMRLILIEDPESGELIQEYTVPVGEHLVVTNEMLI
EKGAKITDGPVSPHDILKIKGLVEAQQFILESVQQVYREQGVAVNDKHIEIIVKQMFQKI
KVKEAGDTLFLEDELIDKKIVERENEILISKGKRPATYEPVIQGITKAAVNTESFISASS
FQETTKVLANAAVEGKTDRLEGLKENVIIGKKIPGGTGFKDYRYLDAVLKNDVLEEENAK
IEAEASEGKIEIDETLQTVKDNSNKIEETVETE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgacagtattcaaataaaattggcatcgccagaaaagattttg
gaatggtcgtatggtgaaataacaaaagccgaaacaataaattatagaactttaaaacct
gaaatggacggattattctgtgagagaatatttgggccgtctaaggattatgagtgtgcc
tgcgggaagtataagagaatgcgatacaaaggcatggtgtgtgaaaaatgtggtgttgaa
gtgacaacttcaaaagttagacgtgaaagaatgggacatattaaacttgctacaccgatt
gcacatatctggtattctaaaggtacgcctaataaaatgagccttttattgggaatcagt
acgaaggaattggaatcagttctgtatttttcaagatatattgtgactgatccaggagaa
actgggcttcaaaaaggagaaatcctgacagagcgggaatataaactgcaagaaagtcaa
tttaaaaacgaatttacggcaaaaatgggagctgaaggagttttagccttacttgaggaa
attgatttgcttgaattagagaaaaaacttcaaaatgaaatggacacagaacactctact
caaaaaagaagaaaagttataaaaagattaaaaatagtaagagatttgatagaagctgga
aatagaccagaatggatgattatgactgtgttaccagtaatccctgctgatttacgtccg
atggttcaattagatggtggaagatttgccacttctgacttgaatgacttgtacagaaga
gtaattaacagaaatataagacttaaaaaattgatgtcaataaaagctcctgaaattgtg
attaaaaatgaaaaaagaatgcttcaggaagctgtggatgcattaattgacaatggtaga
cgtggaaaaccagttgttacacaaaacaacagggaattaaaatcactttctgatatgtta
aaaggtaaacaaggtcgttttagacaaaatcttttgggaaaacgtgtggattattcagga
agatcggttattgtcgttggaccaagtttaaaaatgaatcaatgtggtcttcctaaaaaa
atggcacttgagctgtataagccatttttgatgagagagcttgtaaaaagggaattagct
tcaaatattaaagtggctaagaaaatggtggaagaagaagatgaaaatgtatgggaattg
attgaagaaattattaaaaatcatcctgttcttttaaaccgtgctccaacattgcataga
ctttcaattcaggcatttgagccaatcttgatagaaggaaaggcaataagacttcatccg
cttgtatgttctgcatttaatgctgattttgatggtgaccaaatggcagtacatttggta
ttgtcacaagaagcacaaatggaagcaaaattattaatgcttgcaacaaataacattatt
gcaccgtcaagtggtagaccgatagcagttccatcacaagatatggtaatgggatgttat
tatatgacaaaggaaagaaaaggtgtaaaaggagaaggaaaatctttttctaacaaaaat
cagttaattacagcttaccaaaatgggcaagttgcagttcatgcacttgtaaatgtgaga
attgacggacaaactattcaaactacacctgggcgtcttatgtttaacacaatgcttcca
aaagaagtgagagattatactaaaacctttggtaaaggtgaattagggaaattaattgct
ggattatataagaaatttggatttgagaaaacatcagcattattggataaaattaaagaa
tttggtttccattatggaacacttgctggaattactgttggaattgaagatctggaaatt
ccagaaagcaagaagactattttggaaaaagctgaaaatgaagtggctgaaattgaagag
caatataaggctggagaaatcattgatgcagaaagatacagaagaacagttgcgatttgg
gatgaggcagtttcaaaagtaactaaggatatgatggacaacttggatgaatttaatcca
gtttacatgatggcgaactctggagccagagggtcaattgcacaaatgcgtcaacttggt
ggaatgcgtggacttatggcagatacgcaaggacgtattatcgaaatgccaattaaagcc
aactttagagaaggacttaatattcttgaattctttatgtcatcacatggagcgagaaaa
ggacttgccgatacagcattaagaacggcggattcaggatatttgacaagaaggcttgtt
gatatttcacacgaagttattgtaaatcatgatgactgtggatgtgagcatggaattgta
gtatcagacttgatggatgcaggggaagttattgaaaaattaagtgaaagaatttacgga
agaaacttagcaactgacttgattcacaatggagagcttattgccaagagaaatacttta
ataactgatgacttgattaagaaaatcgaagaactggatattcgtgaagtggaaataaga
acgcctttgacttgtaaattggaaaaaggagtttgtaaaaaatgttacggactagacctt
tctaaccataaggaaattcttaaaggggaagcagttggagttattgcggcacagtcaatt
ggagagcctggtacacagcttacaatgcgtactttccatactggaggggtagcaacggca
gcttctgttcagtcagatgctaaagctgatgtttctggaaaagttaaatttagagatatt
actacacttgtaaatgaggaaggaaaagaaattgttgtatcacaaaatggacgtgtaata
ataggaaagcatagatatgaagtgccatcaggttcggctttacacgtaaaagacggagat
acagttgagaaagggcaagttcttgtagaatttgatccttaccaaataccgattattaca
tctgaagaaggaaaagtggaatttagggatatttacgtaagagaaaatattgacgtaaaa
tatggagttactgaaaaagttgcgataaaacctgtggagagtaatgatgtaaaccctaga
attatcatttatacaaaagataacagaagagttgaatatgcagttccatatggagcatat
ttgatggtaaatgaaggggatacggttaagaaagggcaagttattactaaaattttgaaa
actggagaaggaaataaggatattactggaggtcttcctcgtgtgcaggaattatttgag
gcaagaaatcctaaaggaaaagctattctgtcagaatttgcaggacgtgtagtattctca
gacaaaaagaaaaaaggtatgagattaatcttgattgaagatcctgaaagtggagaatta
attcaggaatatacagttccagtgggagaacacttagttgtaactaatgaaatgttaatt
gaaaaaggtgccaaaattactgacggacctgtttcgccacatgatattctgaaaataaaa
gggcttgtagaagcacagcaatttattcttgaatcagtacagcaagtgtatagagaacaa
ggagttgcagttaacgacaaacatattgaaataattgtaaaacaaatgttccaaaaaatt
aaagttaaggaagctggagatacattattcctagaagatgaattaattgacaagaaaatt
gtggaacgtgaaaatgaaatattaatttcaaaaggaaaacgtccagcaacatatgagcca
gtaattcaaggtattacaaaagccgcagtaaatacggaaagtttcatttcagcatcatca
ttccaggaaacaacaaaagttcttgcaaatgccgctgttgaaggtaaaacagacagactt
gaagggcttaaagaaaatgtaattatcggtaagaaaatacctggaggaactggatttaaa
gattatagatatttggatgcagttttaaaaaatgatgtactggaagaagaaaatgcaaaa
atagaagctgaagcaagtgaaggaaaaattgaaatagatgaaactttacaaactgttaaa
gacaactcaaataaaattgaagaaacagtagaaacagaataa
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