Lentisphaerae bacterium WC36: LJT99_00405
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Entry
LJT99_00405 CDS
T10936
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lbac Lentisphaerae bacterium WC36
Pathway
lbac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LJT99_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbac03400
]
LJT99_00405
Enzymes [BR:
lbac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LJT99_00405
DNA repair and recombination proteins [BR:
lbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LJT99_00405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
UvrD_C_2
SH3_13
Viral_helicase1
OB_YrrC
AAA_11
HHH_5
UvrD_C
Helicase_RecD
NTPase_1
HHH_2
RsgA_GTPase
AAA_16
UvrD-helicase
nSTAND3
AAA_22
NPHP3_N
TraI_hel_assoc_N
RuvB_N
SLFN-g3_helicase
AAA_18
cobW
AAA_14
AAA
T2SSE
AAA_28
DnaB_C
Flavi_DEAD
AAA_17
Motif
Other DBs
NCBI-ProteinID:
UDQ98021
LinkDB
All DBs
Position
complement(82368..84587)
Genome browser
AA seq
739 aa
AA seq
DB search
MAENFDNNFNFNSNEENYTSHSSLTTVEVRGEISKVKFHNEENNFTIMEITDTQGVRHTA
VGVVTGGYIGQGIVINGIIDHHKDFGKQLKIKDYHYTLPVTCEGIEKYLSSNLIQGIGPK
LAKQIVTHFGLKTLEILDNYSSRLTEVPGIGKGKAKNIKEAWENQQSRRDIYIFLQSLGV
TPSYCNKIYLKYKSETANVLKENPYQIADDIDGIGFLTADKIALKMGLSATSKNRLISGI
SYILKKQQQNGHCCIPENELIKLAVEALNVDIKTIQLAINEAINEKKLVREIAFSEPSIY
LNSLYKAETELVILVRRLAMANKHKCQILRNNLALDNSSSKFSDEQLQAVDNVSKSPLSI
ITGGPGVGKTTVISEIVKRATEAKLKIKLAAPTGKAAKRLSQSANLEATTIHRLLKFDPA
SNGFTHNQYEPIKCDLLIVDEVSMLDINLAVSLFKAIKPTTTVVLVGDPDQLPSVGPGEV
LHDFINCGLFKVSNLTQIFRQGSTSNIITNAHNVNAGILPQRVQKQGQGLTDFYWIVQND
SSKIPELILKMATERIPQRFKFNAKRDIQILTPTNRGETGTIALNALLQEHLNSGNKPQF
KSGDKVYKSGDKVMQISNNYDKSVFNGDTGYIGNINNHAKTFEVHFDNHTVLYEFNEVDQ
ITLAYAVTIHKSQGSEFPVVIMPITTAHYMMLQRNLIYTGMTRAKKLLILIGNDKAVSMA
VSNFTRQPRFSNLLNRIKQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaatttcgacaataactttaatttcaattcaaatgaagagaattatacatca
cattcttcattgacaactgtcgaagtgcgtggcgaaatttctaaggttaaatttcataat
gaagaaaacaattttactattatggaaattaccgatactcaaggagttcgtcacacagcc
gtaggggttgtaactggcggttatataggtcaaggcattgtaataaatggaataattgac
catcataaagatttcggcaaacagctaaaaattaaagattatcactatacgttacctgtt
acctgtgaaggaattgaaaaatatttatcctcaaatttaattcaaggtataggtccaaag
ttagcaaaacaaattgtgacccattttgggttaaaaacgctcgaaattctcgataattac
tcatctcggttaaccgaagttcctggtattggcaaaggcaaagcgaaaaatatcaaagag
gcatgggagaatcaacaatcacgacgtgatatttatatttttttacagagtttaggagtt
actccaagctattgcaacaaaatttatctcaagtataaaagtgaaacagctaatgtttta
aaagaaaatccatatcaaatcgcggatgatattgatggaattggttttttaactgcagat
aaaattgcgctcaaaatgggattaagcgcaacatcaaaaaaccgtctaatttcaggcatt
agctatattcttaaaaaacaacagcaaaacggtcattgttgcataccagaaaatgagtta
attaagttagcagttgaagcattaaatgttgatattaagacaattcaattggcaattaac
gaagcaatcaatgaaaaaaaattggtgcgtgaaatagccttttctgaaccaagtatttat
cttaattcattgtataaagctgaaacagagttagtaattttagtacgtcgtttggcaatg
gcaaataaacataaatgccaaattttgcgcaataatttagcattagataacagtagtagc
aagttttctgacgaacaacttcaagcagttgataatgttagcaaaagtcctttatcaatt
attacaggtggtcctggggttggtaaaacaaccgttattagtgaaattgttaagcgagca
actgaggcaaaattgaagattaagttagctgcgccaacgggaaaggccgccaaaagatta
tcgcaatcagcaaatttagaagcaacaacgattcatcgccttttgaaatttgaccctgcg
tcgaatggttttacccataatcaatatgaaccaattaagtgtgatttattgattgttgac
gaagtttctatgctagatattaatttagcagtgtctttatttaaggctataaaaccaaca
acaacggtagttttagttggtgaccctgatcagttaccttcagttggacctggagaggtt
ttgcatgattttattaattgtggactatttaaggtcagcaatttaacccaaatttttcgt
caaggatcaaccagtaatattattaccaatgcccacaatgttaatgctggaattttgccg
caacgagttcaaaaacaaggtcaaggtttaacagatttctattggattgtgcaaaatgat
tcaagcaaaattcctgaattaattcttaagatggcaaccgagcgaatcccacagcgtttt
aaatttaatgccaagcgcgacattcaaattttaacgccgacaaaccgcggtgaaactgga
actattgccttaaatgccttacttcaagaacaccttaacagtggcaataaaccacaattt
aaaagtggagataaagtttataaaagtggcgataaagtgatgcaaatcagcaataattat
gataaatcagtttttaatggcgacactggttacatcggtaacattaataaccatgcaaaa
acatttgaggtgcattttgataatcacactgtactttatgaatttaatgaagtagatcaa
atcaccctcgcctacgcagtgacaattcataaatcacaaggcagtgaatttccagttgtt
atcatgccaataacaactgctcattacatgatgttgcagcgcaatttaatctatacaggc
atgactcgtgcaaaaaaattattaattttaattggaaatgataaagccgtttccatggcg
gtaagcaactttacccgccaaccacgctttagtaatttacttaaccgtattaagcaatag
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