Lentisphaerae bacterium WC36: LJT99_00895
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Entry
LJT99_00895 CDS
T10936
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lbac Lentisphaerae bacterium WC36
Pathway
lbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJT99_00895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbac03019
]
LJT99_00895
Enzymes [BR:
lbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LJT99_00895
Messenger RNA biogenesis [BR:
lbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJT99_00895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
Zip
Motif
Other DBs
NCBI-ProteinID:
UDQ98111
LinkDB
All DBs
Position
198312..200255
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AA seq
647 aa
AA seq
DB search
MIKRIIAKLLNTFGTTEKENKQKSQNLSKKNSRNSKNRKNNDNKNKSKQRDNTVKNNNKS
RSNNRNANRKKTNSNNKNNNSNSRAKNNSNQQKKKTKNRKKPIQSKLNIAEHVVFEKAAK
LVEVEPKEGELRFTELPKLHDDILHGLQYLKFKYCTPIQKLSLPESLSGKDVVGKAQTGT
GKTAAFLITLFNHILNNPIENRRNGSCRALVLAPTRELAIQIYKDAEQLSRFFAVNNLVV
FGGAGHAQQREVLRTKPIDILVGTPGRVLDYIRGGDLHLRNTEMLVIDEADRMLDMGFIP
DVRSIVVKTPRPGERQTMFFSATFDEKILRLVDNWLKDPIRVEDESESAVTDLINQRFVT
VCRGEKLAYLLWLLRNEKFDRVMIFGNRKDQNFILYKNLRDHGVKCELLAGDVAQNKRMR
ILDDFKAGKIKIIIATDVAARGIHVKGVSHVINYDLPERAEDYIHRIGRTGRAGQTGESI
SFVCEYGAYALSDIEQLIDITAKCEFLTDEQLKMPSKNEMRQIMKDLGNNKSNTEKRDKL
QNSKSEVQGNVSKKAELKSEKVEQPKTEKENKAEDNTEKIEQPKAEKEEKTEDNIEKVEQ
PKRDVYEKPLVVSDDGAQKSITEKTANQASEIDVADTDNSNVSITVD
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
ttgataaaacgtatcattgcaaaattgctaaatactttcggaacaaccgaaaaggagaat
aaacaaaaatctcaaaatttaagcaaaaaaaacagcagaaacagtaaaaatcgcaaaaat
aatgataataaaaacaaatcaaaacagcgagacaatactgtaaaaaataataacaaaagt
cgtagtaataatcgaaatgctaatagaaaaaaaactaatagcaataataaaaataataac
agtaattctcgagctaagaataattcaaatcagcaaaagaaaaaaacaaaaaatcgcaag
aaaccgattcaaagtaagttaaatattgctgagcacgtagtatttgaaaaagcggcaaag
ctggttgaagttgagccgaaagaaggagaattacgttttactgaattaccaaaattacat
gatgatatccttcatgggttgcaatatttgaagtttaaatattgtacgccaattcaaaaa
ttaagtttgcctgaatctttatctggaaaagatgttgtaggtaaagcgcaaacaggaact
ggaaaaacagcagcatttttaattacattgtttaatcatattttgaataatccaatcgaa
aatcgccgtaatggtagttgtcgagcattagttttagcgccaacacgtgagttagcaatt
caaatttataaagatgctgaacagttaagcaggtttttcgccgtaaataatttggttgtt
tttgggggggctgggcatgctcaacaacgtgaagttcttcgtactaaaccaattgatatt
ttggttggtacgcctgggcgtgttttggattacattcgtggtggagatttgcatttgcgt
aatactgaaatgttggtgattgatgaagctgaccgtatgcttgatatggggtttattcct
gatgttcgcagtattgttgtaaaaacaccacgtcctggggagcgtcaaacgatgtttttt
agcgcaacttttgatgaaaagattttgcgtttagttgataattggttgaaagatccaatt
agggttgaagatgaatctgaaagtgcagtgactgatttaattaatcagcgctttgtaacg
gtatgtcgtggggagaaattggcatatttattatggttgttacgcaatgaaaagtttgac
agggtaatgatttttggtaatagaaaagatcaaaatttcattttatataaaaatttacgc
gatcatggtgttaagtgtgaacttttagcaggtgacgttgctcaaaataaacgtatgcgt
attttagatgattttaaggctggaaaaattaagattattattgctacagatgtggcagcg
cgaggtattcatgtcaagggtgtttcacatgtgataaattatgatttgccagagagagca
gaagattatattcatcgaattgggcgtactgggcgcgcaggacaaacaggtgagtcgatc
agtttcgtttgtgaatatggggcatacgctttgtctgatattgagcagttaattgatata
accgcaaagtgcgaatttttaacggatgagcagttgaaaatgccatcaaaaaatgaaatg
cgccaaattatgaaggatttgggtaataataaatcaaatactgaaaaaagagataagttg
caaaatagcaaatctgaagtacagggcaacgtaagtaaaaaggctgaattaaaatcagaa
aaagttgagcagccaaaaactgaaaaagaaaataaagcagaagataatacagaaaaaatt
gagcagccaaaagctgaaaaagaagagaaaacagaagataatatagaaaaagttgaacaa
ccaaagcgtgatgtttatgaaaagccgttggttgttagtgatgatggagctcaaaaaagt
ataactgaaaaaacagctaatcaagcgtcagaaatcgacgttgcggatactgataatagt
aatgtttcaattactgttgattaa
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