Lentisphaerae bacterium WC36: LJT99_06385
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Entry
LJT99_06385 CDS
T10936
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbac Lentisphaerae bacterium WC36
Pathway
lbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJT99_06385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbac03019
]
LJT99_06385
03009 Ribosome biogenesis [BR:
lbac03009
]
LJT99_06385
Enzymes [BR:
lbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LJT99_06385
Messenger RNA biogenesis [BR:
lbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJT99_06385
Ribosome biogenesis [BR:
lbac03009
]
Prokaryotic type
rRNA helicases
LJT99_06385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
NadN_nucleosid_C
HTH_CLF_N
NAT10_TcmA_helicase
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
UDQ99156
LinkDB
All DBs
Position
complement(1489451..1491256)
Genome browser
AA seq
601 aa
AA seq
DB search
MTKLPKFKELGLSDKVLEALVKKGFEEPSEIQALTIPLLLNSEKDVVAQAQTGTGKTAAF
GLPIIERLEGHKKHVQAIILTPTRELTLQVVEELNSLKGDKDLKMTPIYGGQSIEIQIRN
LKRGVDVVVGTPGRVMDHIRRGTLKLDNVSFAVLDEADEMLQMGFVEDIEFILEHTKEDR
KMLMFSATMPKEIMNIAQNFMSDHEIVKVEKKTLATTLTDQIYFEVRRESKFEALCRILD
LEHDFFGMVFCRTKNDVDEVAEKLVNRGYMADALHGDISQAQRTKVINRFKNARFNVLVA
TDVAARGIDVQNLTHVINYSIPQEAEAYVHRIGRTGRAGRKGTAITFVTPAEYRKLNLIQ
KIAQTDIRREDLPDAEKIVEHKKIKLQQDISKLISENEHSDYLKFSRDLLVKHDADWLVS
ALLKMVCKNDLLPSSYSDLKPKKRNDRRKDRNKKRGRDFGYDAVGADDNEERARLFIAKG
KKDDFSPRKLVDYIEQKSRVKGRKIDGVSCFDTFSFVTVSFSDAEKIIESLNSGNKSNRP
IVEIAKDSKDDKNKSKNRDKSRARRSKRFGDDFDKNNKKDKRKRDRKSDRKGSAKKRKRN
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattaccaaaatttaaagaactagggttgtctgataaagtattagaagcctta
gtaaagaaaggttttgaagaaccttctgaaattcaagctttaacaattccgttgcttttg
aatagcgaaaaagacgtagttgctcaagctcaaactggaacaggtaaaactgcagcattt
ggtttgcctattatcgaaagattagaaggacataaaaaacatgttcaagcaattatttta
acaccaacacgtgaattaacactacaagttgttgaagagttaaattcattaaaaggtgac
aaagatttaaaaatgacccctatttatggcgggcaaagtattgaaattcagatcagaaac
cttaagcgaggtgtagatgtagttgttggtactcctggccgtgtaatggatcatattcgc
cgtgggacattgaaactagataatgtttcatttgcagtgcttgacgaagctgatgaaatg
cttcaaatggggtttgtggaggatattgaatttatcttagagcatactaaagaagatcgt
aaaatgttaatgttttctgcgacaatgcctaaagaaatcatgaatattgcacaaaatttt
atgagtgatcatgaaatcgttaaagtcgaaaagaaaacattagcgacaactttaacagat
caaatttattttgaagttagacgtgagagtaaatttgaagcattatgtcgtattttagat
ttagaacatgatttctttgggatggttttttgccgtacaaaaaatgatgtagatgaagtc
gctgaaaaattagttaatcgtggctacatggctgacgcattgcatggcgatatttctcaa
gctcaaagaacaaaagttatcaatcgttttaagaatgctcgttttaatgttttagttgct
actgacgttgcagctcgtggtattgatgtgcaaaatttaacgcatgtcattaattattct
attccacaagaagctgaggcatatgttcaccgtatcggtcgtacaggtcgagcagggcgt
aaaggtactgcgattacatttgtaactccagctgaatatcgtaagctaaatttaattcaa
aaaattgctcaaactgatattcgccgtgaagatttacctgatgctgaaaaaattgttgaa
cataaaaaaattaagttgcaacaagatattagtaagttaattagtgaaaatgaacatagc
gattatttaaaatttagtcgtgatttattagtaaagcatgatgctgattggttagtttct
gctctattaaagatggtttgcaaaaatgatttactaccttctagttatagtgacttaaaa
cctaaaaaacgcaacgatcgccgtaaagatcgcaataaaaaaagagggcgcgattttggt
tatgatgctgtcggcgctgacgataatgaagaacgtgcacgattatttatagctaaaggc
aaaaaggatgatttttcgcctcgcaaattagttgactatattgagcagaaaagccgtgtt
aagggtcgtaaaattgatggcgttagctgctttgatacattctcttttgtaacggtatca
ttttcggacgctgaaaaaattattgagagcttaaattcaggcaataagagcaatcgccca
attgtagagattgctaaagactctaaagacgataaaaacaaatcaaaaaatcgtgataaa
tctcgtgctcgacgtagtaaaaggtttggcgatgattttgataagaataataagaaagat
aaacgtaaacgtgatagaaagtcagatcgtaaaggttctgcaaaaaagcgcaaacgtaat
tcttaa
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