Lycium barbarum (goji berry): 132598601
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Entry
132598601 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132598601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132598601
03041 Spliceosome [BR:
lbb03041
]
132598601
03009 Ribosome biogenesis [BR:
lbb03009
]
132598601
03016 Transfer RNA biogenesis [BR:
lbb03016
]
132598601
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132598601
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132598601
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132598601
Complex C
U4/U6.U5 tri-SnRNP related factors
132598601
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132598601
Transfer RNA biogenesis [BR:
lbb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132598601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132598601
NCBI-ProteinID:
XP_060167554
LinkDB
All DBs
Position
6:complement(124662720..124674535)
Genome browser
AA seq
993 aa
AA seq
DB search
MGSFKRKSQEFSNEDNIPPSKQLKQNDLLGVGEPVACLHDVSYPEGYVPSASTSTLPQQD
SKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMLYKGSDFTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSHFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYMVVDDKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECELLAMQMAKMDLNNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKLLQEERDSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTLDVLTRCIVQKDEV
GRKTIKVVQLKDTGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRQNTLKKVSEVLNRF
SREGMPLLHPEDDMKVQSSSYRKASNRIEALEGLFEEYEIAKSPLINEKLKVLHKKKELT
SKIKSIKRTMRTSTILAFKDELKARKRALRRLGHITRDEFVETKGKVACEISSADELTLT
ELMFNGTFSELKVEEMVSLLSCFVWQEKLQDAQKPREELELLFAQLQDTARKVAKVQLES
KVQIDVENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQ
AAKSIGDIVLEAKFEEAVAKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaaatcacaagaattctccaatgaagataatatacctccaagt
aaacagttgaaacagaatgatttactaggtgtcggcgagccagtggcgtgtttgcatgat
gtatcatatccagaagggtatgtgccctctgcttcaacttccactttgcctcaacaagac
tcgaaacctgctaaggagttcccttttacgctcgatcctttccaatctgaagcaatcaac
tgccttaataatggtgaatctgtcatggtatcagcacacacgtcagcgggaaagacagtt
gtcgcattgtatgcaattgccatgtcgctgaaaaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtctgatgactggagatgtcacgattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgtagtatgctgtacaaaggatcagattttacaagggaggtggcttgggtt
atttttgacgaggtacactacatgcgtgatagagaaagaggagtagtttgggaggaaagc
attgttatggcccccaaaaattctcactttgtgttcctctcagccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcagccatgtcacattgtttataca
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
atggtggttgatgataaagggaaatttcgtgaggatagttttcagaaagctttgaatgct
cttgttcccgccaatgaaggggataagaaacgagagaatgggaagtggcagaagggtttg
gttgttggcaaatctggcgaggatagtgacatattcaagatggttaaaatgattatccag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagaatgtgaacttctagca
atgcagatggccaaaatggatctaaataatgatgacgagaaggtgaatattgaaactatt
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgccccaggtctcaaat
atgcttccccttttgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcattaagtgtttgtttgccacagag
actttcagtatagggttgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcggggaattgatgaacgtgggatctgcatccttatggttgatgagaagctt
gaaccttctacagctaaattcatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtctgaagacggtcatcccgaaaat
ctgctccgtaactcgttttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaaacttcttcaagaggagagagactcaattgtgattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaagagggatgtacgtggcatt
gttttctctccaaaatattgcttacctttcttgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgatgttccaaccttctccatcaaggaagaagtcacatgggga
gtaataattaattttgaaagggtgaaaggtctttctgaagatgatgcaaacaaaaaacca
gaggacgcgaactatacattagatgtactcacaagatgtatagtgcagaaggatgaagtt
ggtagaaaaacaattaaagttgtccagttgaaggatactggggaaccagctgttgtctct
cttcctttatcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcggaagttcgacaaaatacactaaagaaggtttcagaagttctcaatagattt
tcaagagagggcatgcctctcttacacccagaagatgacatgaaggttcaaagtagctcg
tacaggaaggcctcaaataggatagaggcattggagggtctgtttgaagagtacgagata
gcgaagtctccccttataaatgagaagcttaaggttttgcataagaagaaagaacttact
agtaaaatcaaatcaattaagagaacaatgcgtacttcaactatcttagctttcaaagat
gaacttaaagcaaggaaaagagctcttaggagactcggacacatcacaagggatgaattt
gtggagacaaaagggaaggttgcctgtgaaatcagcagcgcagatgagttgaccttgact
gaattgatgttcaatgggaccttcagcgaacttaaagtggaggagatggtctctcttctc
tcttgttttgtgtggcaagaaaagcttcaagatgctcaaaaaccccgggaagagcttgag
ttgctctttgcacagttacaggatacagctaggaaggtggcaaaagttcagctcgagagc
aaggtccaaatagacgttgagaactttgtgagttctttccgacctgatatcatggaggcc
gtctatgcctgggctcgaggatctaagttttatgagatcatggaaatgactccggtgttt
gagggcagtctaatcagggctatcaggagattggaggaagttcttcagcagctaatacaa
gctgcaaaatccattggggatattgtgcttgaggcaaaatttgaagaggctgttgccaag
atcaagagggacattgtctttgctgcatctctctatttgtag
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