| Entry |
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| Name |
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
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| KO |
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| Organism |
lbb Lycium barbarum (goji berry)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:lbb00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132598601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:lbb03019]
132598601
03041 Spliceosome [BR:lbb03041]
132598601
03009 Ribosome biogenesis [BR:lbb03009]
132598601
03016 Transfer RNA biogenesis [BR:lbb03016]
132598601
Enzymes [BR:lbb01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132598601
Messenger RNA biogenesis [BR:lbb03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132598601
Spliceosome [BR:lbb03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132598601
Complex C
U4/U6.U5 tri-SnRNP related factors
132598601
Ribosome biogenesis [BR:lbb03009]
Eukaryotic type
Pre-60S particles
Helicases
132598601
Transfer RNA biogenesis [BR:lbb03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132598601
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:complement(124662720..124674535)
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| AA seq |
993 aa
MGSFKRKSQEFSNEDNIPPSKQLKQNDLLGVGEPVACLHDVSYPEGYVPSASTSTLPQQD
SKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMLYKGSDFTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSHFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYMVVDDKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECELLAMQMAKMDLNNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKLLQEERDSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTLDVLTRCIVQKDEV
GRKTIKVVQLKDTGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRQNTLKKVSEVLNRF
SREGMPLLHPEDDMKVQSSSYRKASNRIEALEGLFEEYEIAKSPLINEKLKVLHKKKELT
SKIKSIKRTMRTSTILAFKDELKARKRALRRLGHITRDEFVETKGKVACEISSADELTLT
ELMFNGTFSELKVEEMVSLLSCFVWQEKLQDAQKPREELELLFAQLQDTARKVAKVQLES
KVQIDVENFVSSFRPDIMEAVYAWARGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQ
AAKSIGDIVLEAKFEEAVAKIKRDIVFAASLYL |
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| NT seq |
2982 nt +upstreamnt +downstreamnt
atgggttcttttaagaggaaatcacaagaattctccaatgaagataatatacctccaagt
aaacagttgaaacagaatgatttactaggtgtcggcgagccagtggcgtgtttgcatgat
gtatcatatccagaagggtatgtgccctctgcttcaacttccactttgcctcaacaagac
tcgaaacctgctaaggagttcccttttacgctcgatcctttccaatctgaagcaatcaac
tgccttaataatggtgaatctgtcatggtatcagcacacacgtcagcgggaaagacagtt
gtcgcattgtatgcaattgccatgtcgctgaaaaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtctgatgactggagatgtcacgattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgtagtatgctgtacaaaggatcagattttacaagggaggtggcttgggtt
atttttgacgaggtacactacatgcgtgatagagaaagaggagtagtttgggaggaaagc
attgttatggcccccaaaaattctcactttgtgttcctctcagccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcagccatgtcacattgtttataca
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
atggtggttgatgataaagggaaatttcgtgaggatagttttcagaaagctttgaatgct
cttgttcccgccaatgaaggggataagaaacgagagaatgggaagtggcagaagggtttg
gttgttggcaaatctggcgaggatagtgacatattcaagatggttaaaatgattatccag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagaatgtgaacttctagca
atgcagatggccaaaatggatctaaataatgatgacgagaaggtgaatattgaaactatt
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgccccaggtctcaaat
atgcttccccttttgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcattaagtgtttgtttgccacagag
actttcagtatagggttgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcggggaattgatgaacgtgggatctgcatccttatggttgatgagaagctt
gaaccttctacagctaaattcatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtctgaagacggtcatcccgaaaat
ctgctccgtaactcgttttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaaacttcttcaagaggagagagactcaattgtgattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaagagggatgtacgtggcatt
gttttctctccaaaatattgcttacctttcttgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgatgttccaaccttctccatcaaggaagaagtcacatgggga
gtaataattaattttgaaagggtgaaaggtctttctgaagatgatgcaaacaaaaaacca
gaggacgcgaactatacattagatgtactcacaagatgtatagtgcagaaggatgaagtt
ggtagaaaaacaattaaagttgtccagttgaaggatactggggaaccagctgttgtctct
cttcctttatcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcggaagttcgacaaaatacactaaagaaggtttcagaagttctcaatagattt
tcaagagagggcatgcctctcttacacccagaagatgacatgaaggttcaaagtagctcg
tacaggaaggcctcaaataggatagaggcattggagggtctgtttgaagagtacgagata
gcgaagtctccccttataaatgagaagcttaaggttttgcataagaagaaagaacttact
agtaaaatcaaatcaattaagagaacaatgcgtacttcaactatcttagctttcaaagat
gaacttaaagcaaggaaaagagctcttaggagactcggacacatcacaagggatgaattt
gtggagacaaaagggaaggttgcctgtgaaatcagcagcgcagatgagttgaccttgact
gaattgatgttcaatgggaccttcagcgaacttaaagtggaggagatggtctctcttctc
tcttgttttgtgtggcaagaaaagcttcaagatgctcaaaaaccccgggaagagcttgag
ttgctctttgcacagttacaggatacagctaggaaggtggcaaaagttcagctcgagagc
aaggtccaaatagacgttgagaactttgtgagttctttccgacctgatatcatggaggcc
gtctatgcctgggctcgaggatctaagttttatgagatcatggaaatgactccggtgttt
gagggcagtctaatcagggctatcaggagattggaggaagttcttcagcagctaatacaa
gctgcaaaatccattggggatattgtgcttgaggcaaaatttgaagaggctgttgccaag
atcaagagggacattgtctttgctgcatctctctatttgtag |
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