Lycium barbarum (goji berry): 132598656
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Entry
132598656 CDS
T09483
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
lbb03012
]
132598656
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132598656
Translation factors [BR:
lbb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132598656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
UBA_DHX29
Helicase_C
DEAD
HA2_C
HA2_N
DSRM_DHX29
nSTAND3
AAA_19
ATPase
AAA_22
ABC_tran
NPHP3_N
Rad17
DND1_DSRM
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132598656
NCBI-ProteinID:
XP_060167636
LinkDB
All DBs
Position
6:complement(125530243..125558964)
Genome browser
AA seq
1448 aa
AA seq
DB search
MPPKKKQSSSKGKGSSSSSTGPKLQISAENENRLRRLLLNSGRSTQSSAPTPAEDALSKA
QKAKKLRSIYEKLSCEGFSDHQIEQALSSLKERATFEAALDWLCLNFRGNELPLKFSSGT
SQLNEGSVGIISTAREDWVPSADSSVAEVKDERIPKVSVVPKGRSDSESLRTVERSQADW
IRQYMEQQEEDEAESWESGYFDDGSLEQQVPRKKRSIESIVQEFHTARLEAIHAKERGDK
KSHEQAGRTIRKIKQEISALGLSADILESAHESASNHAVLDMSSEKLDVDDVTLHNFRTS
NIYEQANIHEHEIEIDEKVAVNSSSNEFTENTPPSVPIDDEVASGGAPEDVELGDFLFEE
DSSADVSSTILELQKKEKMRELCSQKNLEKLEGIWKKGDPQKIPKAFLHQLCQRSRWEAP
KYAKTPGKGNISNYSVSVMRKASGRGKSRKAGGLVTIELPSQDHTSSTAEDSQNRVAAYA
LHRLFPDLPVHMPITEPYASLILQWEEGDSVKDIVDDQVERRAYFVDSLLDASSSETITH
SDVSNNAIEEKFLEPHTTKDKTVAADFTAKNPRKETESLSLKKEQEGRKKLKKYQEMLKS
RAALPIADLKGEILHSLEENDVLVICGETGCGKTTQVPQFILDDMIESGRGGHCNIICTQ
PRRIAAISVAERVADERCESSPGSSESLVGYQVRLDSARNERTKLLFCTTGILLRMFSGN
KNLAGFSHIIVDEVHERSLLGDFLLIVLKSLIQKQSALGTAKLKVILMSATVDSHLFSHY
FGDCPVLTAQGRTHPVSTYFLEDIYESINYRLASDSPASLSYGTSTREKNAPIGNHRGKK
NLVLSAWGDESLLSEEYTNPYYDPSNYENYSGQTQKNLRKLNEDIIDYDLLEDLVCYIDE
TYPEGAILVFLPGVAEIHTLLDRLSVSFQFSGQSSEWILPLHSSVASEDQKKVFMRPPEN
IRKVIIATNIAETSITIDDVVYVVDCGKHKENRYNPKKKLSSMVEDWISQANARQRRGRA
GRVKPGICFCLYTSYRYEKLMRPYQIPEMLRMPLVELCLQIKLLSLGSIKLFLSMALEPP
KDEAIMSAISLLYEVGAVEGDEELTPLGYHLARLPVDVLVGKILLYGGVFGCLSPILSIS
AFLSYKSPFVYPKDERQNVERAKLALLGDKLGCETDSGSGNWQSDHLLMMVAYKKWEKIL
RENGVKAAKQFCSSYFLSSSVMYMIRDMRIQFGTLLADIGLINLPKKSEIDWKKKEKLDS
WLSDISQPFNINSNHSSILKAILCAGLYPNVSAREEGIATTALGNLKQNAGLSAKSYPAW
YDGKREVHIHPSSINFDLKAFQYPFLVFLEKVETNKVFLRDTTVVSPYTILLFGGPINVQ
HQTGTVTIDGWLEVAAPAQTAVLFKQLRLTLHDILKELIRNPQASKVTDNEVLRSIIQLL
LEEDKQRK
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgaagaagaaacagtcgtcatcaaaaggcaaaggttcttcttcttcatcaaca
ggtcccaaattacaaatatctgctgagaacgagaatcgtctccgacgactattgcttaat
tccggccgatcaacacaatcttcggccccgactcccgcagaagatgctctctccaaagca
cagaaagccaagaaacttcgttctatttacgaaaagctttcttgtgagggcttttctgat
catcaaattgaacaagctttatcctctctcaaggagagagccacgtttgaagctgcgtta
gattggctatgcttgaattttagagggaatgagcttcctctgaagttttcaagtggtact
tcccaattgaacgaaggttctgttggtatcatatcaactgcccgagaagattgggttcct
tcagcagattcatctgtggcagaagttaaagatgagagaatacctaaagtttcagttgtg
ccgaagggtcgaagtgatagtgaatctctacgtacagttgaacgttcacaggctgattgg
atccgtcagtatatggaacaacaggaagaggatgaagctgaaagttgggaatctggttat
tttgatgatggttccctagagcagcaggttccgcggaaaaagcgtagtattgagtccatt
gtccaagaatttcatactgcaaggctggaagctattcatgcaaaggagcgcggagacaaa
aagagccatgaacaagccggccgaaccattcggaagatcaagcaggagatatctgctcta
gggctatcggctgatatcctggaatctgcacatgaaagtgcttcgaaccatgcagtactg
gacatgtcctcagagaaacttgatgttgatgatgttactttacacaatttcagaacgtcg
aatatttatgaacaggcgaatattcatgaacacgagatagaaatagatgaaaaggtagct
gtcaatagcagctctaatgaattcactgaaaacactccaccaagtgttcctatagatgac
gaggtggcttcaggaggagcaccagaagacgtagagcttggtgatttcttatttgaagaa
gattcctctgctgatgtttcgtctactatactagagctgcagaagaaagaaaagatgaga
gaattatgtagtcagaagaacttagagaagttagaaggtatatggaaaaagggagatcca
caaaagattccaaaggcttttcttcatcaactatgtcaaagatcaaggtgggaggcacca
aagtatgcgaaaacacctggaaaaggaaatatttcaaattactcagtcagtgtaatgcgc
aaagccagtgggaggggtaagagcagaaaagctggagggctagtaacaatcgagcttcct
agtcaggatcatacttcttctactgctgaggattcacaaaacagagttgcagcttatgct
ctccatcgcttgtttccggatctcccagttcacatgccaattaccgagccatatgcatca
cttattttgcagtgggaggaaggtgattccgtgaaagatattgtggatgatcaagtggaa
cgaagggcctattttgtggattcattactagacgctagcagttcagaaaccataactcat
tctgatgtctccaataatgctatcgaagaaaagtttttagagcctcacaccacaaaagat
aagacagtggctgctgattttacagccaaaaatccccgtaaagaaacagaaagtctctct
ctgaaaaaggaacaggaggggcggaagaagctgaagaagtaccaggaaatgttaaaatca
cgggctgcccttcctattgctgacttaaaaggcgagatcctgcattcactggaggagaat
gatgttttggtcatttgtggggaaacaggttgcgggaaaacaactcaggtccctcaattt
atactggatgacatgattgaatcaggacgtgggggacactgtaacattatatgcacacaa
ccaaggcgaatcgcggctatttctgtggctgaaagagttgctgatgagcgttgtgaatct
tcaccaggttcgagtgagtccttggttggttaccaagttcgcctcgatagtgcaaggaat
gagagaacaaagctcctcttttgtacaactggcattcttttgagaatgttttcaggaaat
aaaaacttggctggttttagtcatatcattgttgatgaagtgcatgagaggtcacttctg
ggtgattttctgctcattgtcttgaagagtctcatccagaagcaatctgcccttggtacg
gcaaaactgaaagttatactcatgtctgcgacagtagattcacatttgttttctcattac
tttggtgactgccctgtacttactgctcaaggccgaacacatcctgtttcaacttacttt
cttgaggatatttatgagagtatcaattaccgccttgcatctgattctcctgcttctttg
agctatgggacatctactagggaaaagaatgctcctattggcaatcatagggggaagaag
aaccttgttctctctgcatggggtgatgaatcgttgctgtctgaagaatacacaaatccc
tattatgatcccagtaattatgaaaactacagtggacaaactcaaaaaaatttgaggaaa
ttgaatgaagacattattgattatgatcttctcgaagacctggtatgctacattgatgaa
acatacccggagggtgctatactggttttcttaccgggggttgcagaaatacatacctta
ctcgatagactgtctgtctccttccagtttagtggacagtcttctgaatggattcttcct
ttgcattcttctgtagcatctgaggatcagaaaaaagtgtttatgagacctccagaaaac
atccgtaaggttataatagctacaaatattgcagagactagcataaccatagatgatgtg
gtttatgtggttgactgtggaaagcacaaagaaaatcgctataatccgaagaagaaattg
tcgagcatggttgaagattggatatctcaagctaatgcaaggcaacgtcgaggcagagct
ggacgtgtaaagccaggaatctgcttttgtctctatacttcttaccgatatgagaagctc
atgcggccttaccagatcccggagatgttgcggatgccgttggtagaattgtgcttacaa
atcaaattgctatcacttggaagcataaagctatttttgtctatggctcttgaacctccg
aaggatgaggctattatgtcagcaatttctttgttgtatgaggttggtgctgttgaaggg
gatgaagagttaactcctctcgggtatcatttggcgagacttcctgttgatgtgttggtg
ggaaagatactgttatatggtggagtatttggctgcttgtcaccaattctatctatttca
gccttcctgagttacaagtctccatttgtttatccaaaagatgagaggcaaaatgttgaa
agagccaagttggcacttttgggtgataaacttggctgtgaaactgactctggcagtggt
aactggcaatctgaccatctcctaatgatggtagcgtataaaaagtgggagaaaattttg
cgggagaatggagtcaaagcagcaaagcagttttgcagctcatatttcttaagcagttct
gtcatgtatatgataagagacatgagaatacaatttggaacattactagctgacattgga
ctcatcaacctcccaaagaagtcggagattgattggaaaaagaaagagaagcttgacagt
tggctttcagatatatcacagccttttaatataaattcaaatcattcctcaattcttaag
gccatattgtgtgcaggtctgtatcccaatgtatctgcgagagaagaaggcattgctaca
actgctcttgggaacctaaaacagaatgcaggtctttcagcaaagagttaccctgcgtgg
tatgatggaaaacgggaagttcacatacacccttcgtcaatcaactttgacttaaaagct
tttcagtacccatttctcgtctttcttgaaaaggtagagactaacaaggtatttttgcga
gacaccactgttgtctctccttatactatattgctttttggtggaccaataaacgttcag
caccagactggaacagttaccatagatggatggttagaagttgcagcaccggcacaaaca
gctgtgctatttaagcaactccggctaactcttcatgatatcctcaaggagcttattcgt
aatcctcaggcttccaaggtgactgataatgaagttctcagatctataatccaattgcta
ttagaagaagataaacaaagaaaatag
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integrated database retrieval system
