Lycium barbarum (goji berry): 132600055
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Entry
132600055 CDS
T09483
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132600055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132600055
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132600055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
132600055
NCBI-ProteinID:
XP_060169173
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All DBs
Position
1:complement(157580412..157589644)
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AA seq
943 aa
AA seq
DB search
MDEKFEEQGKLPELKLDARQAQGFLSFFKTLPKDPRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPNFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSEYRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFEFAAGALGCILSYAELLADESNYGNYRVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTRNLERKRASLLHVVKLYQSSIRIPFIKSVLERYDGQ
FATLIRERYIDPLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISAAYDPSLSALKDEQ
ETLEGQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRKQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKIVEEYKSCQKELVARVVQTVVSFSEVFEGLAGSLSELD
VLLSFADLASSCPTAYARPSITPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHIVGEIKAPTLFATH
FHELTALATGNASNGHKQIAGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALAREKASELEDFSPNAMIPNDCKEAASKRKREFDPNDVSRGTARARQFLQD
FTQLPLDKMDLKQALQQLSKMKTNLEKDAVDSQWLQQFFSSSD
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaagtttgaggaacaaggcaagcttcccgagcttaaacttgatgctaggcaa
gctcaagggtttctctcattcttcaaaaccctacccaaggaccctagggcagttcgtctc
ttcgatcgtcgggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccatacaacaactgctttacgacagttgggtaatggagttggtgctctttccagt
gttagtgtgagtagaaatatgtttgaaacaatagctcgtgacattctcttggagagaatg
gatcgtactcttgaattatatgagggcagtggctcaaactggagactggtcaaaagtgga
actcctggaaattttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggcgattgttgctcttgctccaaactttgatcagaacggctgtacagttgggtta
ggctatgttgatattactaagagagtccttggtttagcagaatttctagacgatagccac
ttcaccaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccaaca
gagactgggaaatccagtgaatacagacctctgtatgatgcaatatcgagatgtggcgtg
atggtaactgaaagaaagaaaactgaatttaaagggagggatttggtacaggatcttggt
aggctcgtcaagggttcagtagaacctgttcgtgatttagtctctggtttcgaatttgca
gcaggtgctttagggtgcatactttcctatgcagaactacttgcagatgagagcaattat
ggaaactacagagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgtcatggagagcaaatcagatgctaacaaaaactttagcttgttc
ggtctcatgaatagaacctgtactgctggtatgggtaaaaggttattgcacatgtggctg
aaacagccgttattagatgtagatgagattaactgtagactggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatctgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacgcaatcttgagaggaaaagagccagtttactgcacgttgtaaaactc
tatcagtcaagcatcagaataccatttatcaaaagcgttttggaacgttatgatgggcaa
tttgccacacttatcagggaaaggtatattgatcctcttgagaaatggagtgatgataat
cacctgaataagttcattgctcttgtggaaactgctgttgaccttgatcaacttgagaat
ggagaatacatgatttctgctgcatatgacccaagtttatctgctctgaaggatgagcaa
gagacattggagggacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctatcgataagtctcttaaactagataaaggaacacaatttggacatgtcttcagaatt
accaagaaagaagaaccaaaagtgaggaagcagctaaattctcactacattgttcttgaa
acacgtaaggatggagtaaaatttaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcgtagaagagtataagagctgtcagaaagaactggtagctcgtgtagttcaa
acagttgtgagtttctccgaggtgtttgaaggtctagctggttcactttctgagttggat
gtgctactgagttttgcggatttggcttccagttgcccaactgcctatgcaagaccaagt
atcactcctccagatacgggagatattatacttgaagggtgtaggcatccttgtgtggaa
gctcaagactgggttaacttcatccctaatgactgtagactagtcaggggagagagttgg
tttcagattattacaggccctaacatgggtggaaaatcgacctacattcggcaggttggt
gtgaatgtcctgatggcccaagttggctcctttgttccgtgtgacaatgctaccatttct
attcgtgattgcatttttgctcgtgttggcgctggagattgccagctgaggggagtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagccactgatagatca
ttgattataattgatgagttgggccgtgggacatcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttggagaaattaaagcaccaacattgtttgccactcac
tttcatgagctgactgcgttggccactgggaatgcaagcaatgggcataagcaaattgct
ggtgtagcaaattttcatgtcagtgcacacattgactcttctagtcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcaaagttttggtattcacgtcgcagagttt
gccaattttccacagagtgttgtggccctggccagagaaaaggcatctgaattggaggat
ttctctcctaatgccatgattccaaatgactgtaaagaggcagcttcaaaacggaagaga
gaatttgaccccaatgatgtgtctagaggtactgcccgagctcgtcaattcttacaggat
ttcactcagctgccactggataagatggatctaaagcaggccttgcaacagttgagcaaa
atgaagaccaacctggagaaggatgcagttgacagccagtggctccagcaattctttagt
tcttcagattag
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