Lycium barbarum (goji berry): 132600370
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Entry
132600370 CDS
T09483
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132600370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132600370
03009 Ribosome biogenesis [BR:
lbb03009
]
132600370
04131 Membrane trafficking [BR:
lbb04131
]
132600370
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lbb04147
]
132600370
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
132600370
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
132600370
Membrane trafficking [BR:
lbb04131
]
SNARE
SNARE associated proteins
Others
132600370
Autophagy
Aggrephagy
Other aggrephagy associated proteins
132600370
Exosome [BR:
lbb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
132600370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
AAA_18
ATPase_2
Parvo_NS1
Viral_helicase1
IstB_IS21
ABC_tran
Vps4_C
NACHT
AAA_7
AAA_lid_PRS2_C
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
132600370
NCBI-ProteinID:
XP_060169460
LinkDB
All DBs
Position
6:777139..785828
Genome browser
AA seq
802 aa
AA seq
DB search
MSHKSDSKNGGRKDFSTAILERKKAANRLIVDEAVNDDNSVVALHPSTMEKLQLFRGDTI
LIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSIHQCPDVKYGKRVHIL
PIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCVVA
PDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP
KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP
SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALR
RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEA
ALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWQD
IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN
FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSGGDSGGADR
VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKA
CLRKSPLSKDSDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPDS
MDEDVDDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPEASG
GTAAADPFATSNAAADDDDLYS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaaatctgactcaaaaaatggcggtaggaaggatttttcaacggcgattttg
gaacggaaaaaagcagcgaataggttaattgtagatgaggcagttaatgatgataattct
gttgttgctttacatccttctactatggagaaacttcagctttttcgtggagatacaatt
ctcattaagggaaagaagagaaaggacactgttgtcattgcccttgctgatgaaacatgt
gatgagccaaagattaggatgaacaaggtggtccgttcgaatttgagggttcgacttgga
gatgttgtatctatccaccagtgtccagatgtcaagtatgggaagcgtgtccacatactg
cctatagatgatacaatagaaggtctcacaggggatctgtttgatgcattcctaaaacct
tactttttggaggcatatcgacctttgaggaaaggggacaatttccttgttagaggaggg
atgagaagtgtggaattcaaggtcatagaaactgaccctggggagtattgtgtagttgct
ccagacactgaaatcttttgtgagggtgagcctgtgaaaagggaggatgaggagagactt
gatgaagttggctatgatgatgtgggtggtgtgagaaaacagatggctcagattcgtgaa
ctggtggaattaccgttgaggcatcctcaacttttcaaatctattggtgtgaaaccacct
aaggggattttactttatggaccccctggttctggaaagactctgatagccagagctgtt
gctaatgaaacaggtgcatttttcttttgcattaatggacctgaaatcatgtccaaattg
gctggagagagtgaaagtaatctcaggaaggcatttgaagaggctgaaaagaatgctcct
tccatcatatttattgatgaaattgattcaattgctcccaagcgagagaagacacatggt
gaagttgaaaggaggattgtctcacaactcttgactctgatggatggactgaaatctcgc
gctcatgtaatagtgatgggagctaccaaccgtccaaacagcattgatcctgctctgaga
aggtttggtaggttcgatagagaaatagacattggtgtccccgatgaagttggacgtctt
gaagttcttcgcattcataccaagaatatgaagcttgcggaagaagttgatttggaaaga
atttcgaaagatacacatggttatgttggtgcagatcttgctgctctttgtactgaagct
gcacttcagtgcattagggagaaaatggatgtcattgatctggaagatgacactattgat
gctgagattttgaactcaatggctgtaacaaatgagcacttccaaactgctctcggtaca
agcaatccgtctgcattacgtgaaacggtggttgaagtgcctaatgtgtcatggcaagac
attggaggccttgaaaatgtcaaacgagagcttcaagagactgttcaatatccagtggaa
cacccagagaagtttgagaagtttggtatgtcaccttcaaaaggtgtacttttctatggt
cccccaggatgtggtaaaactctacttgccaaggcaattgcaaatgaatgtcaagccaat
ttcatcagtgtcaaaggacctgaactgctcaccatgtggtttggagagagtgaggcgaat
gttcgggaaattttcgataaagcgagacaatctgcaccctgcgtcctcttctttgatgag
cttgactctattgctactcagaggggaagcagtggtggagattctggaggagctgatcgg
gttctgaaccaacttctgactgaaatggatggtatgaatgcaaagaagactgtttttata
attggagccacaaacaggcctgatataattgaccctgcacttctgcgacctggccgtctt
gaccagttaatctatattcctctgccggatgaagattcacgccatcagattttcaaggca
tgtctcagaaaatctcccttatcaaaggatagtgatttgagagctctcgccaaatatacc
cagggatttagtggggctgatatcactgagatctgtcaacgagcctgcaaatatgccata
agggagaacatagagaaagatatagaaagggagaggagaagaagggacaatccggattct
atggatgaggatgttgatgacgaagtaccagagatcaagcccgcgcattttgaggagtct
atgaagtatgcacgacgaagtgtcagtgatgctgatatacgtaaataccaggcatttgct
cagacgttacagcagtccagaggttttggaacagaatttcggtttcctgaggctagtggc
gggactgctgcagctgacccgtttgcaacttctaatgctgcagctgatgatgacgacctg
tatagctga
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