Lycium barbarum (goji berry): 132600495
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Entry
132600495 CDS
T09483
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132600495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lbb04131
]
132600495
Membrane trafficking [BR:
lbb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
132600495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
Beta-prop_HPS5
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
zf_RING_Vps8
WD40_Prp19
WDR55
Beta-prop_EML_2
zf-RING_2
zf_RING_Vps8_fungal
WDR90_beta-prop_4th
EIF3I
VPS8_N
Beta-prop_WDR90_POC16_2nd
zf-HC5HC2H
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
132600495
NCBI-ProteinID:
XP_060169690
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All DBs
Position
6:3418642..3432714
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AA seq
991 aa
AA seq
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MSRKLSDNGIDGDDERYEYSEEYSDEEEIEEDEYEPRLKYQRMGGSVQSLLSSDAATCIA
VAERMIALGTYGGAVHILDFLGNQVKEFAAHTAAVNDLCFDAEGEYIGSCSDDGSVVINS
LFTNERMKFEYHRPMKAIALDPDYVRKSARRFVTGGLAGNLYLNAKKWMGYRDQVLHSGE
GPIHAVKWRTNLIAWANDAGVKVYDAANDQRITFIERPRGSPHPELLVPHIVWQDDTLLV
IGWGTSVKIASIKTIQNKGVNGSYKYITMSSLNEVDIVASFQTSYFISGLAPFGDSLVIL
AYIPAEEDREKDFSSTIPSRQILNLRWTKDMKRVIFGGHVGMAKRSSVARICEFIQQGNA
QRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYV
VSPKDVIIAKPRDTEDHINWLLQHGWHEKALEAVEANKGRSELVDEVGSRYLDHLIVERK
YGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYIPTEHPRLRDTAYEVALVAMTT
NPSFHKDLLSTVKSWPPGIYSTSPVISAIESQLNTSSMTDHLKEALAELYVIDGQHEKAF
ALYADLMKPDLFDFIEKHNLHDAVREKVVQLMMVDSKRTVPLLIQHRDLIHPPEVVSQLM
AARNKCDHRFLLHLYLHSLFEVNPHAGREYHDMQVELYADYDPKMMLPFLRSSQHYTLEK
AYDICVKRDLLKEQVFILGRMGNAKQALAVIINRLGDIEEAIEFVSMQHDDELWDELIKQ
SLNKPEMVGVLLEHTVGNLDPLCIVNMLPNGLEIPRLRDRLVKIVTDYRTETSLRHGCNA
ILKADCVNLLVKYYKEAKRAICLSEDVDQARSQRSEQRSSYLGERVMSMKSMEVKSKTRG
GGRCCICFDPFSLQNVSIIAFFCCHAYHTTCLMESTISIGNKKEGGAASKGSASYYEFDN
GTDDEEEDDDDEDASSGTPRMRCILCTTAAG
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtaagttatctgataacggaattgacggcgacgatgaaagatacgaatattcc
gaagaatattccgatgaagaagaaatagaagaagatgaatatgaaccaaggcttaagtat
caacggatgggaggcagtgtacaatctcttctatcaagtgatgctgccacgtgtattgct
gttgctgaacgaatgattgcacttggtacttacggtggtgccgttcacattctagatttc
cttggcaatcaagttaaagagtttgctgcgcacactgctgcagtcaacgatctctgcttt
gacgcagaaggtgaatacattggaagctgttctgatgatggatctgttgtaataaatagt
ctttttactaatgagaggatgaaatttgagtatcatcgacctatgaaggccattgcttta
gacccagattatgtgagaaaatctgccagaagatttgtgactggtggtttagctggtaat
ttgtatcttaatgcgaagaagtggatgggctatcgggaccaggttctgcactctggtgaa
ggtccaattcatgcagtgaagtggcggactaatctcattgcctgggcgaatgatgcagga
gttaaagtttatgatgctgccaatgatcagcgcataactttcattgaacgacctcgtgga
agtccacaccctgaacttctggtccctcatatagtttggcaggatgacactcttttggtc
attggatggggcacctctgtgaaaattgcatcaataaaaacaatccagaacaaaggcgtg
aatgggtcatacaagtatataaccatgtctagtctgaatgaggtggatattgtggcatcc
tttcaaaccagctatttcatttcaggacttgctccttttggtgattctttggttattcta
gcttatattcctgccgaagaagatagagagaaggacttcagcagcactattccttcaaga
cagattttaaacctaagatggaccaaagatatgaagagggttatcttcggggggcacgta
gggatggcgaagaggtcatctgttgctaggatttgtgaattcatccaacagggaaatgct
caaagaccagaagtgcgtgttgtgacgtggaataatgatgagctggctaccgatgctctt
cctgtacatggctttgagcattacaaggcgaaagattattcgcttgcacatgctccattt
tcaggtagcagctatgcagggggtcagtgggctgctggtgatgagcccttgtactacgtt
gtgtccccaaaagatgtgattattgcgaagcccagggacacagaagatcatattaattgg
cttctccagcatggatggcatgagaaagctttagaagcagttgaggctaataagggaagg
agtgagctcgttgatgaggtgggttcgagataccttgatcatctgattgtggaaaggaag
tatggcgaagcggcatctttatgtccaaagttgttgcgaggatcagcttccgcatgggaa
aggtgggttttccattttgcacatctgcgtcaactccccgtgttggtcccatacattcca
acagaacatccaagattacgtgatacagcttatgaggtagctcttgttgctatgacaaca
aatccgtctttccacaaggatctcttatcaactgtgaaatcatggccacctggcatttat
tctacatcacctgttatatcagctatagaatctcagcttaatacttcatctatgactgat
cacctcaaagaggctctagcagaattatatgtgattgatggacaacatgaaaaagctttt
gctctttatgcggatcttatgaagccggacctgtttgacttcattgaaaagcataatttg
catgacgctgtgcgtgaaaaggttgtccaactaatgatggttgacagcaagcgtaccgta
cctttgttgatccagcatagggacctaatacacccgcctgaagtggtatcacaacttatg
gctgcaaggaataagtgtgaccatcgtttccttttgcatctgtatcttcattcactattt
gaggtgaatcctcatgctggacgggagtaccatgacatgcaggtcgagctttacgctgac
tatgatccaaagatgatgcttccctttctcagaagtagccagcattatacacttgagaag
gcttatgatatctgcgtgaagagagatttattaaaggagcaagttttcatcctcggaaga
atggggaacgcaaagcaggcgcttgctgttatcataaatagattaggagacatagaagag
gccatagaatttgtaagcatgcaacatgatgatgaactatgggatgagctgattaagcaa
agtcttaataagcccgaaatggttggtgtattgttagagcatactgtagggaatcttgat
cccctttgtattgtaaatatgttgcccaatggcttggaaatacctcgtctgagggaccgt
ctggtcaaaattgtcactgactacagaacagaaacttctcttagacatggttgtaatgcc
atactcaaggctgattgtgtcaacctgctagtcaaatactacaaggaagcaaagcgtgca
atatgtttgagtgaggacgtcgatcaagcacggtcccaaaggagtgagcagaggtcttca
tatttaggagagagagtcatgagtatgaaatccatggaggtcaagtcaaaaaccagaggt
ggtggaaggtgttgcatatgttttgatccgttttctctacagaacgtatcaattattgcc
ttcttttgttgtcatgcctaccatacaacttgtcttatggagtccaccatttccattggc
aataaaaaagaaggtggtgctgcttccaagggaagtgcgtcatattatgaatttgataat
ggtactgatgatgaagaagaagacgatgatgatgaagatgcttcttcaggtacccctcgg
atgcgttgtattttgtgtactacagctgcaggttga
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