Lycium barbarum (goji berry): 132600622
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Entry
132600622 CDS
T09483
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132600622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132600622
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132600622
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132600622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
132600622
NCBI-ProteinID:
XP_060169901
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All DBs
Position
6:6309647..6310828
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AA seq
282 aa
AA seq
DB search
MAVENIDSDPNLIKIREVWSDNLESEFELIRSIIDQYPFISMDTEFPGVIFKPEVGPFRR
NKRHVAQLPSESYKLLKSNVDVLNIIQVGLTLSDSNGNLPDLGTDHKYIWQINFSDFDVE
RDMHAPDSIELLRRHGINFEKNKEFGVDSVYFAELMMSSGLICNENVSWVTFHSAYDFAY
LVKILTRRELPEDLIDFLEILRVFFGNNVYDVKHLMRFCERLYGGLDRVAEALEVNRAVG
KCHQAGSDSLLTWQAFKKMRDVYFVKDGPEKYAGVLFGLEVY
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgaaaatattgattcggatccaaacctgattaagatccgagaagtttggtca
gacaatcttgaatcagaatttgaacttatacgttctataattgatcaatacccttttatt
tcaatggatactgaatttccaggtgtaattttcaagcctgaagtgggtccctttcgaagg
aataagcgacacgtggcacagttaccgtcagaatcttacaagttgttgaagtcaaacgtt
gatgttttaaacataattcaagttggactaacgttgtcagattctaatggtaatttacct
gatttaggtactgatcataagtacatatggcagattaatttttcagattttgatgtggag
cgtgacatgcacgcgcctgattcgattgagttacttagacgtcacggtattaatttcgag
aaaaataaagaatttggggttgattctgtttattttgctgagttaatgatgtcgtctgga
ttaatttgtaatgaaaatgtaagttgggtgactttccatagcgcgtatgatttcgcgtac
cttgtaaagattctcacgcgccgagaacttcctgaggacttaattgactttttggagatt
ctcagggtgttttttggaaacaatgtttatgatgtgaaacacttgatgaggttttgtgag
agactttatggtggtttagaccgggttgcggaagcacttgaggtgaaccgggcggttgga
aagtgtcatcaggccggttcagatagcttgctgacgtggcaagcctttaagaaaatgagg
gatgtgtactttgtaaaagacggaccggaaaaatatgccggcgttttgtttggattagaa
gtgtattaa
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