Lycium barbarum (goji berry): 132600829
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Entry
132600829 CDS
T09483
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132600829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132600829
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132600829
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
132600829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132600829
NCBI-ProteinID:
XP_060170221
LinkDB
All DBs
Position
6:complement(13909445..13940438)
Genome browser
AA seq
1389 aa
AA seq
DB search
MRRTQETIQVTKQPYIEDVGPRKIKSIQFSLFSEAEVLKQAEVEVYKGVYYESTKKPIPN
GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYFVLALPVYNVGYLGAVVHILKCICKCCS
SILLNDKDRRDYLKKMRNPRTEFLKKSELQKKVVDRCNAMTNSQKTVTCSKCGYMNGVVK
KGQLTIIHERGNRFLDEINVALSHKKELRSSVSVPPEIDPKAVYSLFKNMSDEDCELLYL
SDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDISERLKLIIQTNASLRQEMSDTNNN
KSLSLWVNLQMEVAQYINSDVRGVPLHMQTPKPLSGFTQRLKGKQGRFRGNLSGKRVEYT
GRTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHP
DGTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRT
LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDF
LTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPTPAFIKPVELWTGKQLFGVLLRPY
SKMRVYVNLTVTEKSYSGKGETMCQSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLL
RDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIDRNYKKCEDCI
QQFNEGKLAVAPGCDAAQTLEAEVTMSLNKVRDDIGKICMRALDWRNSPLIMSQCGSKGS
PINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFF
FHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDNTVRNASTCIIQFMYGDDGMD
PSQMEEKKGRPLNFSRLFMKVKATCPPGDEKSLSYSEICEIVNERLSCHDMSPEGGCSEA
FRASLSDFLIKNLAETLNKLWEALLLGEEQYAGDDREYLEHIALNISGITKKQLQVFLNT
CISRYHLKRLESGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA
KKITTPIITAKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVMASRLASIIISLDMETI
QVSQLCIDAYTVKRSILQTSKIKLKEHQVKVLNPRKLEVFPQADKDKLHFELHRLKNMLP
AVVVKGITTVQRAVVNKEQQKDRKSDVKGETYELLVEGTGLLAVMGIEGVDGRHTKSNHI
MEVQQTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKM
KDSVLMLASFEKTTDHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGMFKLRQCVEQVEL
NYHSEPMIS
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaacacaagagacaatacaagttactaaacagccctacattgaagatgttggt
cctagaaagataaaaagcattcaattttctctgttctcagaggctgaagttttgaaacaa
gctgaagttgaagtgtacaaaggggtttattatgaatctactaaaaagcctattccaaat
ggcttgttagacccccgaatggggcctccaaacaagaatggatgttgtgaaacatgtcat
ggtaactttagagagtgtccaggtcattacgggtacttcgttcttgctctaccagtttat
aatgttggatatttaggcgctgtggtgcacatcttgaagtgcatttgcaagtgctgctcc
tcgatacttctaaatgacaaggaccgtcgggactatttgaagaagatgagaaatccaaga
actgagtttttgaagaagagtgaactccaaaaaaaggttgtggataggtgtaatgccatg
acaaatagccagaaaactgtcacatgttccaaatgcggatacatgaatggtgtggtgaaa
aagggccagttaacaatcatacatgaacgaggaaatcgtttcttggatgagattaatgta
gctctctctcacaagaaagagctcaggtcatctgtcagtgtgcctccagaaattgaccca
aaagcagtttactccctttttaagaatatgtccgatgaggattgtgagttactctacctt
agtgatagaccagaaaaactccttgttacaagtattccggtgccaccaatagctattcgc
ccttcagtatttgtggatggtggaacacagagcaatgagaatgacatctcagagaggctt
aagctcattattcaaacaaatgccagtcttcgtcaagagatgtctgataccaacaacaat
aagagtctgagtctctgggttaatctgcaaatggaagttgcacagtatataaacagtgat
gttcgtggagtgccactacatatgcaaactcctaaaccattgagtggtttcactcaacgt
cttaaaggaaagcagggacgattccgtggaaatctctcaggaaagcgcgtggaatatact
ggccgaactgttatatctcctgatccaaatttgaaaattacagaggttgccattccaata
ctgatggctcgaattttaacatatcctgagcgagtttcacagcacaatatagagaagttg
aggcaatgtgttcgtaatggaccaaataagtatcctggtgcaaagtttatcaggcatccc
gatggaactgagatatcgttgatgttctcttctagaaagcgtcatgctgatgaattgaaa
tttggttatattgttgatcgacatctagaagatggagatatagtcctgtttaacagacag
ccaagtctgcatagaatgtcaatcatgtctcatcgggcaaggataatgccatggcgcaca
ttgagatttaatgaatctgtatgcaacccttataatgctgattttgatggtgatgagatg
aatatgcatgtgccacaaacagaagaggcgaggacagaagctcttatgttaatgggcgtt
caaaacaatttatgcactccgaagagtggagagattttggttgcttctacccaggatttt
ctgacgtcctcctttctcattacgaggaaggacacattctacaatcgtgcttccttttcg
cttatatgctcatatatgggtgacgcaatggatcctacagatttaccaactccagcattt
attaagccggttgagctttggactgggaaacaactctttggtgtgctactgcgtccatat
tcaaagatgagagtctatgtaaatctaacagtcacagaaaagagttacagtgggaaaggg
gaaacaatgtgccaaagtgatggatttgtttatttccgtaatagcgaactgatcagcggg
caactggggaaggctacattaggaaatggaaataaggatggtctatactctgttctgttg
agggactacaagtcccatgctgctgcaacatgcatgaatcggcttgcaaagttaagtgca
cggtggattggaaatcatggattttccatagggattgatgatgtcacacctggggaaaac
ttagttaagcaaaaacaaggagagattgatcgaaattacaagaaatgtgaagattgtatt
caacaatttaatgaaggaaagcttgctgtggcaccggggtgtgacgctgcgcagactcta
gaggctgaagtaaccatgtcgctgaataaagttcgtgacgacataggaaaaatttgtatg
agagcactagactggaggaatagtcctctaatcatgtcacagtgtggatcaaaaggatcc
ccaattaacataagccagatgattgcgtgtgttggtcagcagtccgttggcggccgtcgt
gctcctgatggattcatagatcgaagtcttcctcattttcctttcaaatcaaaatttcca
gctgctaaagggtttgtagctcattccttttttgacggtttgtcagcaactgagttcttt
tttcacacaatgggaggaagagaaggccttgttgatactgcggttaaaactgctgacacc
ggatacatgtctcgtcggcttatgaaagctttagaggaccttgctgtttattatgacaac
actgtacgaaatgctagcacatgtataattcagttcatgtatggtgatgatggcatggat
ccttcacagatggaagagaaaaaaggacgtcccctgaactttagcagattatttatgaaa
gttaaggcaacatgtcctcctggagatgagaagagtttgtcttactcagaaatctgcgag
atagtaaatgaaaggctctcttgtcatgatatgagtcccgaagggggatgctcggaggca
ttccgtgcttcgctgtcagattttttgattaaaaatttagcagaaaccttgaacaaatta
tgggaagccctattattgggtgaagagcagtatgcaggggatgaccgtgaatatcttgaa
cacattgcgttaaacatatctggtattactaagaagcaactgcaggtgttcctcaacact
tgcatctctcgatatcacctgaaaagactagaatctggaactgcaattggtgcaattgga
gctcagagtattggggaacctgggacacagatgacactgaaaacctttcactttgctgga
gttgcaagcatgaatgttacacttggagttcctcgaataaaagaaatcataaatgcagca
aaaaaaatcactactcctataattactgcaaaacttctgtctgctgctaatttaactgca
gcaagaatgattaaagcccgtattgaaaaaactcttttggggcaggtggctaagagtgta
aagattgtgatggcatctcgattagcatcaattattatttcacttgatatggagacaatt
caggtgtcacaactgtgtattgatgcttatactgtcaagcgatcgattttgcagacctca
aaaataaaactgaaggaacatcaagtaaaagttttgaatcccaggaagctggaagttttt
cctcaggctgataaagataaactgcactttgaactgcaccgtctgaaaaatatgctgcct
gctgttgttgtgaagggtattactacggttcaaagggccgtggtgaacaaagaacaacaa
aaagatcgtaaaagtgatgtcaaaggagaaacatatgagttgcttgttgaaggtaccggt
cttctagccgtaatgggcattgaaggagtggatggacgtcatacaaagagcaatcatata
atggaggtgcagcaaactctaggcattgaagcagcaagggtctctattattgatgagatt
aattataccatgtcaagtcatggaatgacaatagacttgcggcatatgatgcttcttgca
gatctgatgacatataagggtgaagtcctgggaataaccagacacggcgttcagaaaatg
aaagatagcgtactgatgttagcttcatttgagaagacaaccgaccacttgtttaatgca
tctgtaaatggaagggatgataagatagaaggagtaagcgaatgtatcatcatgggcata
ccaatgcagataggcactgggatgtttaaacttcggcaatgtgttgagcaggttgagctg
aattatcattcagaacctatgatatcctag
DBGET
integrated database retrieval system
