Lycium barbarum (goji berry): 132603244
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Entry
132603244 CDS
T09483
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132603244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132603244
Spliceosome [BR:
lbb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132603244
Complex C
U5 SnRNP specific factors
132603244
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
132603244
NCBI-ProteinID:
XP_060172187
LinkDB
All DBs
Position
7:17382129..17395472
Genome browser
AA seq
2371 aa
AA seq
DB search
MWSGNNGNGPQDMMWNNSSNIAPPGTTTGGVPPPQPPSMMPPPAPPGTSSGPPAPSYTVL
PTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHD
KRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQW
GTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVY
NWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQLLSDLTDRNYFYLFDMESFFT
AKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPR
KVKLCIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVTKDRREKKVTEDDDDDDFTLPEGVE
PLLTETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSDWFKEHCPPSYPVKVRV
SYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLN
LLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFR
LGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGP
GCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLEL
RAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKS
KADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEE
AVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELG
LIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQY
LWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSEGQCVVMLQTKFEKFF
EKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYG
LVLDLLLLGLTRASEIAGPPQMPNEFITYSDSRVETRHPIRLYSRYIDKVHILFRFTHEE
ARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSI
TTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKTRMTLEAFSNTRDGVWNLQNEQTKER
TAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQEL
LDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQ
QTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLT
LEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKL
WNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRS
GLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQK
IHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSL
VAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIG
LDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLS
SQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHT
SVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVI
KGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALH
VNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQ
SEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQ
AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQI
SGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLPEHDFLTDLEPLGWMHTQPNE
LPQLSPQDVTSHARILENNKHWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDS
GSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPREY
YNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggtaacaacggaaacggaccacaagatatgatgtggaacaacagcagtaat
attgcgccgccaggcactactaccggtggagtaccaccgcctcagccgccgtcaatgatg
cctccgccggcgccacctggcacgagttcaggaccaccggcgccgtcgtatacggtgttg
ccgactgaggcgcagcttgaagagaaagcgaggaaatggatgcagcttaattcaaagcgg
tatagtgataagaggaagtttggatttgttgaaacgcaaaaggaagatatgcctcccgaa
catgtccgcaaaattattagggaccatggggatatgtcatcaaaaaaatatcgtcatgat
aaacgtgtgtatctcggagctcttaaatttgtccctcatgctgtttacaaactcctagag
aacatgcctatgccgtgggagcaggttcgagatgtcaaaatcctgtaccatattactggt
gctattacatttgttaatgagatcccatgggttgttgaacctatatatctggctcagtgg
ggcacaatgtggatcatgatgagaagggagaagagagaccggcggcatttcaagagaatg
cgttttcctccttttgacgatgaggagcctccattagattatgctgataatcttttggat
gttgatccactggagccaatccagttggagatggatgaagaagaggattctgcagtttat
aactggttttatgaccataagccattggttaaaacaaaacttattaacggtcctagttac
cgcaggtggcatttgtcccttcctataatggcaacactccaccgccttgctggacagctg
ctttcagatctgactgatcgcaattacttctacttgtttgatatggaatccttcttcacc
gctaaagcattgaacatgtgcatacctggtggtccaaagtttgaacccttatatcgtgac
atggagaaaggggacgaagactggaatgagttcaatgatatcaacaaattgatcatcagg
tcgccacttaggacagagtacagaattgccttccctcatctctataacaacaggccaaga
aaggtgaagctttgcatatatcacactccgatgatcatgtacataaaaacagaggatccc
gatctacctgctttctattatgatccgcttatacatcccatagtcaccaaggaccgccga
gagaagaaagttactgaggatgacgatgatgatgattttaccttaccggagggtgtggaa
ccgctgctgaccgagactccaatctatactgatactactgctgctggtatttccctattg
tttgccccacgcccatttaacatgagatctgggcggacaaggcgtgctgaagatattccc
cttgtgtcagattggtttaaggagcattgccctccatcatatcccgtcaaagtgcgtgtc
agttatcagaagttgttgaaatgttttgtgttgaacgagttgcatcatagacctcctaag
gcccagaagaagaagcacctcttccgctcacttcaagccacaaaatttttccaaaccaca
gaacttgattgggctgaagctggtcttcaagtttgcaagcaaggatataatatgctgaat
ctcttgatccataggaagaacctgaattatcttcaccttgattacaattttaatttgaag
cctgttaagacactaacaacaaaggaacgtaagaaatcccggtttggaaatgctttccac
ctgtgtcgtgaaattctgcggttgacaaagcttgttgtcgacgccaatgtccagtttcgt
ttgggaaatgttgatgcgtttcagctggcagatggtttgcaatacattttttcacatgtt
ggtcagttgacgggtatgtatcgttacaagtacaggcttatgaggcagattcggatgtgc
aaggatctgaaacatttgatctattatcgatttaatactgggccggttggaaaaggtcct
ggttgtggtttctgggcacctatgtggagggtgtggttattctttcttcggggaatagta
cctcttttggaacgttggttaggaaatctactggcgaggcaatttgagggtcgccattcg
aagggggtggccaaaactgtcacaaagcaacgtgttgaaagccacttcgatttggagctt
cgtgctgcagtaatgcatgatgtccttgatgctatgccagaggggatcaagcaaaataaa
gcaagaaccatcttgcagcatctaagtgaagcatggcgttgttggaaggcaaatattcct
tggaaggtccctggcttgcctgttcctatcgagaacatgattctccgctatgtcaaatcc
aaagctgactggtggacaaatgttgctcactacaaccgtgaacgtataagaagaggagca
actgttgacaagacagtgtgccgaaagaatcttggaagattgactcgcctttggctgaag
gctgaacaggagcggcaacataactacttgaaagatggtccatatgttactccagaagaa
gcagtagcgatatacactaccactgtgcattggttggagtcgaggaagttttctcctata
ccattccctccattgtcatacaagcatgacacgaagctgcttatccttgcacttgagaga
ttgaaagaatcttacagtgtggctgtgaggttaaaccagcagcaaagggaggagttgggc
ctcattgagcaagcttatgataatccgcatgaggcattatcaaggattaagcgtcatttg
cttactcagcgtgccttcaaagaagttggcatcgagtttatggacttgtacagttacctg
attcctgtttatgagattgagccacttgaaaagattactgatgcatacctggaccagtac
ctatggtatgaaggtgataagcgccatctctttccaaattggattaagcctgccgattca
gagccaccacctctgttagtgtataagtggtgtcaaggcataaacaatttgcaaggagta
tgggacaccagtgaaggacagtgtgtggtgatgttgcagacgaagtttgagaaatttttt
gaaaagattgacttgaccatgctgaacaggcttctgcgtttggtgctggaccacaatatt
gctgattatgtcactgcaaaaaacaatgtcgtactgtcttacaaagatatgagccatacg
aattcatacgggctgatacgcggtcttcagtttgcttcatttgttgtacagtactacggg
cttgtgttggatctgttgcttctaggtttaactcgagctagtgaaattgctggtccacct
cagatgcctaatgagttcataacctatagtgattctagagtggaaacaaggcatccaatc
cggctgtactctcgatacattgacaaggtgcatatattatttcgctttactcatgaagag
gctcgggaccttatccaaagatatcttactgagcatcctgatcccaacaatgaaaatatg
gttggctataacaacaagaaatgctggccaagggacgcgagaatgaggctcatgaagcat
gatgttaatcttgggagaagtgtcttctgggacatgaagaatcgactacctagaagtatc
actactttggagtgggagaacagctttgtctctgtttatagcaaagataatccaaacttg
ctcttcagcatgtgtgggtttgaagttcggatactgcctaagactagaatgacactagag
gcattcagcaatacaagagatggagtctggaatttacaaaatgagcagactaaggaacgg
acagctgttgccttcctgcgtgtagatgacgagcatatgaaagtgtttgagaatcgtgtt
aggcagatacttatgtcctctggttctacaacattcacgaagatcgttaacaaatggaac
actgctcttattggccttatgacatatttccgtgaagcaacagtgcatacacaagagttg
ctggacctgctggtcaaatgtgaaaacaagatacagactcgtattaagattggtttgaac
tcaaaaatgcccagcaggtttcctcctgttattttctacacaccaaaggaaattggaggg
cttggaatgttgtcaatgggtcacatattgatcccacagagcgatcttaggtatagtcag
caaacagatgttggtgtgacgcatttcagaagtggaatgagccatgaagaggaccaattg
atcccaaatctttacagatacatacagccttgggagagtgagttcatcgactctcagaga
gtttgggctgagtatgctttgaagaggcaggaagcacaggcacaaaataggcgtttgact
cttgaggatctggaagattcatgggatcgtggaatacctcgaatcaatacattgttccag
aaggatcgtcacacccttgcatatgacaaaggatggagagtgagaacagactttaaacag
taccaagtccttaagcagaatccattctggtggacacaccagaggcatgatggaaagcta
tggaacctgaataactatcgtactgatgttattcaagctcttggaggagttgaaggaatt
cttgagcatacattattcaaaggaacatatttccctacttgggagggtcttttctgggag
aaagcttcaggttttgaggaatccatgaagtacaagaaactgactaatgctcaacgatct
gggctcaatcaaatccctaatcgtaggtttactctttggtggtcgccgacaataaatagg
gcaaatgtctatgttggtttccaagtacagctggacttgactgggatatttatgcacggg
aagattccaactctgaagatatctttgatacagatattccgtgcacatttgtggcagaag
atccatgagagtgttgtcatggatctctgccaagttttggatcaagagttggatgcattg
gaaatcgagactgtacagaaggaaacaattcatccaagaaagagttacaaaatgaatagc
tcatgcgctgacatcctcctctttgctgcgcatagatggccaatgtcaaaacctagtctt
gtggctgaatcgaaggatgtgtttgaccagaaggctagtaacaaatactggatagatgtg
cagctccgatggggtgactatgattctcatgatattgagcgttacacacgagcaaagttc
atggattacacaacagacaacatgtctatttatccatcacctactggtgtaatgattgga
cttgaccttgcttacaacttgcattctgcctttggaaactggttccctggttcaaaaccg
ttgcttgcccaagccatgaacaagattatgaagtcaaatcctgcgctctatgtgctgagg
gaacgcataaggaaagggttgcaactgtattcttcagagcccacagaaccatatttatca
tctcagaactatggagagattttcagcaatcaaatcatatggtttgttgatgacacaaat
gtgtaccgtgtgaccatccacaagaccttcgagggaaatctgacgacaaagcccataaat
ggtgcaattttcattttcaatcctaggacaggtcaactgtttttgaaggtcattcacaca
agtgtgtgggcagggcaaaagcgtcttggccagctagccaagtggaaaacagccgaagaa
gtggctgcacttgtcaggtccttgcctgttgaagaacaaccaaagcaaattatcgtgact
cggaagggaatgcttgatccattggaggtccacttgctcgactttccgaatattgttatc
aaaggaagtgaactgcaattaccattccaggcttgtttgaagatagagaaatttggtgat
ctgatactgaaggctacagagccacaaatggttctgttcaacatatatgatgattggttg
aagagcatttcatcctatacagcattctccaggctcatcctcatcctgcgtgcacttcac
gtgaacaatgaaaaagctaagatgttactcaagcctgacaagtcagtcgtcactgagcct
caccacatctggccttcacttacagatgaccagtggatgaaggttgaggtagcgcttaga
gatctcattctctcagactatgcaaaaaagaacaatgtcaacacatcagcattgacacag
tctgagatccgtgatattatacttggagctgagataactcctccatcgcagcagcgccaa
cagatagctgagattgagaaacaggccaaggaagcaagtcaactgaccgctgttaccaca
aagaccactaatgtccatggtgatgagttgattgttactacaacaagtccctatgagcaa
gctgcctttggctctaaaacagattggcgtgtcagagcaatttctgccacaaatctctat
ctccgtgtgaaccacatatatgtaaattcagaggacataaaggagactggatatacttac
atcatgccgaaaaatattctgaagaagttcatctgtattgctgatctgcggacacaaatt
tctggttacttgtatggtgtgagtccaccagataatcctcaggtgaaagaaatccggtgt
attgcaatgcctccacagtggggcacacatcagcaggtgcatctaccttccggtcttcct
gagcatgattttctcactgacttggagcctttgggatggatgcacacacaaccaaatgag
cttcctcagttatcgccacaggatgttacttcacatgctcggatcctggagaacaacaaa
cactgggatggagagaagtgcattatattgacgtgcagtttcacaccagggtcctgttca
ttaactgcatataagttgacgccaactgggtatgaatggggacgtgctaacaaagattca
ggaagcaaccctcatggttacctgccgactcattacgagaaggtgcagatgctcttgagt
gaccgattccttggattttacatgatacctgataatggtccatggaattacaacttcatg
ggggtgaagcacactgttagcatgaagtacggagtcaagttaggtacacctagggagtac
tacaatgaggatcatagaccaacacatttcctggaattcagcaatatggaggaaggtgac
actgctgaggctgatcgggaggatacatttacataa
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integrated database retrieval system
