Lycium barbarum (goji berry): 132603714
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Entry
132603714 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132603714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132603714
03009 Ribosome biogenesis [BR:
lbb03009
]
132603714
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132603714
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132603714
Complex B
132603714
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132603714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
132603714
NCBI-ProteinID:
XP_060172884
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All DBs
Position
7:complement(107461523..107470220)
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AA seq
502 aa
AA seq
DB search
MSRYDSRPADPGSYRDRRSDSGFGGGSNYKSSSSSRRDYEGKESPRKVDLDGLTPFEKNF
YVESPSIAAMTESEVDEYRLRREITVEGRDVPKPIKSFHDVGFPDYVLQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRVTYLVLDEADRMLDMGFEPQIRKIIAQIRPDRQTLYWSATWPKEVEQLARQFLFNAY
KVIIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTYFTAANARFAKDLINILEEAGQKVSPELAKMGRGAPP
PPGHGGFRDRGRGGYGGSRQWS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccgtccggccgatcctggctcttaccgtgaccgtcgcagtgat
tcgggcttcggtgggggctcaaattacaagtcatcatcatcgagcaggagagattatgag
ggtaaggagtcgccacggaaggttgatttggatggattgactccatttgagaagaatttc
tatgttgaatcaccgtctatcgctgcaatgactgaaagcgaggtggatgagtatagacta
cggcgggagatcactgttgagggtcgtgatgtgcccaagcctataaagtcctttcatgat
gtaggatttccagattatgtcttgcaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggtcgtgatctcattggtatagca
gaaacagggtctgggaagacaattgcttatctattgccagcaattgtgcacgttaatgcc
cagccatttttagcgcctggagatggtccaattgtcttagtgttagccccaactcgtgaa
cttgctgttcagattcaacaagaagctacgaaatttggtgcatcatcacggatcaagaat
acctgcatttatggtggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgttagaatctaataatacaaat
ctgcgaagggtgacatatctcgtgctggatgaggctgaccgcatgctagacatgggtttt
gaacctcagatccgcaaaattattgctcagatacgcccagatcgtcaaacgctgtattgg
agtgccacatggcccaaggaagttgagcagcttgcaaggcagttccttttcaacgcatac
aaagtgattattggttcagctgacctgaaagctaatcatgctattcgccagcatgtcgaa
attgtctcggagagccagaagtataataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggacaccaaaaaggggtgtgaccaggtaactcgacag
ctcaggatggatggttggcctgcactttctattcatggtgataagagtcaagcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagatgtt
gctgctcgaggtctagatgtgaaggacgtaaaatttgtaatcaactatgactttcccgga
tcactggaagactacgttcatcgcattggtagaacaggaagggctggtgcctcggggaca
gcatacacatactttactgctgcgaatgctaggtttgcaaaggaccttattaacattctc
gaggaggctggacagaaggtcagtccggaactggcaaaaatgggacgcggtgctcctccc
cctccaggtcatggaggatttcgagaccgtggaaggggaggttatggaggcagtaggcaa
tggagctag
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