Lycium barbarum (goji berry): 132604024
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Entry
132604024 CDS
T09483
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
132604024
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
132604024
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
CarbopepD_reg_2
SpaA
Motif
Other DBs
NCBI-GeneID:
132604024
NCBI-ProteinID:
XP_060173321
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All DBs
Position
7:120595767..120601699
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AA seq
635 aa
AA seq
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MSSTGLQLNVQNDYVMINNAVVEITWTNPGGIIKGIKYKGIDNLLELNNKDLNGGFWDLN
WSEAGSKKPRGKFDTIEGTDLQVIVENEEQIELSFTRMWSPAVMGEQAPLFIDRRFVVFR
DVPGFYSYAIFEHTKDMPAFNLNTTRIAFMLNKEKFHYMAITDDRQRFMPSAEDRLPGRG
EPLAYPEAVLLVDPIEPEFKGEVDDKYQYSLENRDNHVHGWICFDPPVGFWQITPSNEFR
TGGPFKQDLTSHVNPTTLAIFLTSHYAGTDLLLKFETGEEWMKVLGPVFTYFNSVSDKEM
ALSLWDDAKRQMNKEVQSWPYSFPASEEFPNSGQRGVVKGRLLVKDRYLSKENLPGKDAY
VGLAAPGDAGSWQRENKGYQFWTTTDEDGYFAIKNIRAGSYNLYGLVPGFIGDYKYEVVI
TTTAGSDIELGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPKYVNKLYINRDKFRQY
GLWERYAELYPDNDLVYTVGVSDYQKDWFFAHVNRNIGDNAYQSTTWKIKFKIDNVDQVG
AYTLRLALAAANHAELQVRINDPTADPPLLSSGEIGGDNAIARHAIHGIYWLFNLTIHGS
LLLGGENTIFLTQAKTANILQGIMYDYIRLEGRSS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctacaggactgcagttaaatgttcaaaatgactatgtgatgataaacaatgcg
gttgtggaaataacttggacaaatccaggaggaattatcaaaggaataaagtacaaggga
attgacaacttgctggaactaaacaacaaagatttgaatggagggttttgggaccttaat
tggagcgaggctggtagtaaaaaaccaaggggaaagtttgacacgattgaagggacagat
ttacaagttatagtggaaaatgaggagcagattgagctttcattcacaagaatgtggagt
ccagcagtcatgggtgaacaagctcctttgtttattgataggagatttgtagtattccgt
gatgtcccaggattctactcgtacgccatctttgagcacacgaaagatatgcctgctttc
aaccttaacaccaccagaatcgctttcatgctcaataaagaaaagtttcactacatggcc
ataacagatgatagacagagatttatgcctagtgcagaagaccggcttccaggcagaggt
gaaccgctagcctatcctgaagcggttctcctcgttgatcctatagaacctgagttcaaa
ggagaggtggatgacaaatatcagtattcacttgaaaacagagataatcacgtgcatgga
tggatatgttttgaccctcctgtggggttttggcaaatcactcctagcaatgaatttcga
acaggaggacctttcaaacaagatttaacctctcatgtgaacccgaccacccttgccata
tttctaacttcccactatgctggtacagatcttctgctaaaatttgaaaccggggaggag
tggatgaaagtcctcggccccgtgttcacatattttaactctgtatcagacaaagaaatg
gctctgtcgctttgggatgacgcaaaaagacagatgaacaaagaagtccaatcctggcct
tacagtttcccagcttctgaagagtttcctaactctggtcaaaggggcgtagttaaaggt
cgattgttagtaaaagacagatatttaagcaaggaaaatttacctggaaaagatgcatat
gtaggactagcagccccgggagatgctggatcatggcaaagagagaataagggttaccaa
ttttggactacaacagatgaggacggatactttgctattaagaacatacgtgcaggctca
tataatctttacggattggtacctggatttatcggagattacaagtatgaagttgtaata
actacaacagcaggttctgatattgagttgggtgagcttgtttatgagcctccgagagat
ggtcctaccttgtgggagatcggtatccctgaccgctctgctgcagaattctatattcct
gatccaaacccgaaatatgttaacaaactttacataaatcgagacaaatttaggcagtat
ggtttgtgggagagatatgcagagttatatcctgataatgatttagtctacacagttgga
gtcagtgactatcagaaagactggttctttgctcatgttaacaggaatataggcgacaat
gcatatcaaagtactacatggaaaatcaagttcaagattgataatgtagatcaagttgga
gcatatacattgcgcttggcgcttgcagctgctaatcatgcagaattacaggtccggatc
aacgatccaacagcagatcctcccctactttcaagtggagaaattggaggagacaatgca
attgcaaggcatgctattcatgggatttactggttgttcaatctgacaatacatggttct
ctacttttgggaggagaaaacaccatatttttgacacaagcaaagacagccaacattttg
caggggattatgtatgactatattcgattggaaggtcgctcaagctag
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