Lycium barbarum (goji berry): 132604088
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Entry
132604088 CDS
T09483
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03015
mRNA surveillance pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132604088
09123 Folding, sorting and degradation
03018 RNA degradation
132604088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132604088
03041 Spliceosome [BR:
lbb03041
]
132604088
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132604088
mRNA cycle factors
Stress granule specific factors
132604088
Spliceosome [BR:
lbb03041
]
Complex C
Other components
Complex C specific factors
132604088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_3
RRM_Nup35
RRM_RdRP1_2
SET_assoc
RRM_MARF1
RBD_DGKtheta
HPS3_C
PH_35
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
132604088
NCBI-ProteinID:
XP_060173402
LinkDB
All DBs
Position
7:122459620..122464397
Genome browser
AA seq
669 aa
AA seq
DB search
MAQIQVQHQSPVGGNGVAAATGATLAAAAAAPGGAAAAAGNSQFTSTSLYVGDLEFNVTD
SQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMEMLNFTPVNGKSIRV
MYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFV
QFDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERDSTTGTTKFYNVYVKNLADSTTDD
ELKSVFGEYGIITSAVVMRDADGKSKGFGFVNFENADDAAKAVESLNGKKFDEKEWYVGK
AQKKSEREQELKSKFEQTAKEAVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKV
MRDPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQLVQAQ
FSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPALLPPQAGFGYQQQLVPGMRPG
GAPMPNFFMPMVQQGQQGQRPGGRRGAGPVQQNQQAMPMMQQQMMPRGRMYRYPPGRNVP
EGPMPGVAGGMLSVPYDMGGMLPRDAAMGQPMPISTLASALANAPPEQQRTMLGESLYPL
VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKAKVSEAMEVLRNVNQGTSPADQLAS
LSLNDNLVS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcacagattcaagttcaacatcagagtccagttggaggaaatggcgtggcggcggct
acaggtgccacgttggcggcggcggcggcggcgccaggtggagcggcggcggcggcgggg
aatagtcagtttacgtccacgtcactgtatgttggtgacctggaatttaatgtgacagat
tcacagttatatgatttgtttaatcaagtgggacaggtggtatcagttagggtttgtaga
gatcttagtacaaggagatctcttggttatggttatgttaactacagtaaccctcaagat
gctgcaagggcaatggagatgttgaacttcactcctgtcaatggaaagtccattagggtg
atgtactctcacagggatcccactcttcgtaagagtggatcagcaaacatatttattaag
aacttggacaagtcaattgacaacaaagctttacatgacaccttttcaagcttcggcaac
attctttcttgcaagatagctactgattctaatggccagtcaaagggttatggttttgta
caatttgacaacgaagaatctgctcaaggtgccatagataagttaaatggtatgctgatg
aatgataaacaagtgtatgttggacattttcttcgcaaacaggaaagagactctacaact
ggcacgacaaaattctacaatgtctatgtgaaaaatttggctgactctacaactgatgat
gagttgaagagtgtttttggtgagtacgggattattactagtgcagtagtgatgagggat
gcagatggaaagtccaagggctttgggtttgtcaattttgagaatgcagatgatgctgct
aaagctgttgaatctttaaacggaaagaaatttgatgagaaagagtggtatgttgggaaa
gcacaaaaaaaatctgaaagagagcaagaattgaaaagcaagtttgagcaaactgccaag
gaggcggttgataaataccaaggtgttaatttgtatgttaaaaatttagatgacaccatt
gatgatgagaagctcaaggagcttttttcggagtatggtacgataacttcatgcaaggtt
atgcgggatccaagtggaatcagcaggggatctggatttgttgccttctctactcctgaa
gaagcttccagagctctttctgagatgaacggaaaaatgatagttagcaagccactctat
gttgcactagcacagcggaaagaggagagaagagcaaagttacagttggtacaggcacaa
ttttcacaactgcgaccagtggcaatgcccccatcacttgctcctcgcatgccaatttac
cctcctggtgcccctgggattggacagcagctattttatgggcaaggcccccctgctcta
cttcctccccaggctgggtttggctatcaacaacagcttgttcctggaatgcgtcctgga
ggagctcctatgccgaacttcttcatgccgatggtccaacaaggacaacagggtcagcgc
ccaggtggtcgacgaggagcagggcctgtgcaacaaaatcaacaggctatgcccatgatg
cagcagcagatgatgccaaggggaagaatgtaccgctacccacctggtcgtaatgtgcca
gaggggccaatgccaggtgttgccgggggtatgctctctgttccatatgatatgggtggt
atgcttcctcgcgatgctgcaatggggcagcctatgccaatttcaacattggcttctgcc
cttgcaaatgcaccacctgaacagcagaggacgatgttgggtgaaagtttatacccactt
gttgatcagctggagcacgagcatgctgcaaaggttacgggcatgcttcttgaaatggac
cagacagaggttttgcatctgcttgaatctccggacgctttgaaggctaaagtttctgag
gctatggaagttctgaggaatgttaatcagggtaccagccccgccgaccaacttgcctca
ctttccctcaatgacaaccttgtttcttag
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