Lycium barbarum (goji berry): 132604335
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Entry
132604335 CDS
T09483
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
lbb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132604335
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132604335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132604335
04121 Ubiquitin system [BR:
lbb04121
]
132604335
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132604335
Enzymes [BR:
lbb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132604335
Spliceosome [BR:
lbb03041
]
Complex B
Other components
Prp19 complex
132604335
Complex C
Prp19-CDC5 complex
132604335
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
U-box type E3
132604335
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
132604335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_DCAF12
U-box
PROPPIN
PEP5_VPS11_N
zf-Nse
WDR54
Beta-prop_ACSF4
Beta-prop_WDR75_2nd
WD40_like
PAS_11
Nucleoporin_N
V_ATPase_I_N
KNTC1_N
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
132604335
NCBI-ProteinID:
XP_060173770
LinkDB
All DBs
Position
7:128276353..128289164
Genome browser
AA seq
522 aa
AA seq
DB search
MNCSISGEVPEEPVVSRKSGLLFEKRLIERHISDYGKCPVTGEPLTMDDIVPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQVPMAATTIEPNGAALSNGKRAAEEEEMVPSGKKIRPGIAGDVIKE
LQDCNAALSQQRKRRQIPATLAPVDDIQRYTQLNSYPLHKTNKPGILSLDIHYPKDIIAT
GGVDSNAVVFDRPSGQIVSTLSGHSKRVTNVRFAAEGELLVTGSSDKTVRVWQSSENGNY
DSRLTLKDHSAEVQAVTVHATNKYFVSASLDGTWCFYDLASGLCLAQVADASESEGYTSA
AFHPDGLILGAGTSGAQVKIWDVKTQANVARFDGHVGAVTAISFSENGYFLATAAQDGVK
LWDLRKLRNFRTFSPYDEDTSTQSVEFDHSGSYLALGGSDIRVYQVASVKSDWHSVKILP
DLSGTGKATCLKFGPDAKYIAVGSMDRNLRIFGLPGEDQSES
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttcaggtgaggtaccggaagagccggtagtgtcaaggaaatcagga
cttctatttgagaagcgattaattgaaagacacatttcggattatggtaaatgtccagtc
actggagagccactgacaatggatgacattgttccagttaaaactggcaagatagtgaag
ccccgacctgtgcaggctgccagtattcctgggatgttgggaatgtttcagatagagtgg
gatggtctgatgctatccaattttgctttggaacagcaattacatacggcaaggcaagag
ctgagtcatgctctatatcagcatgatgctgcatgccgtgtaattgctaggctgaaaaag
gaaagggatgaggcaagagcattgcttgcacaggctgaaagacaagtacccatggcagca
actacaatagaacctaatggtgctgctctaagcaatgggaaaagagctgcggaagaagag
gagatggttcctagcggtaagaaaattcgcccaggaatagctggtgatgttattaaagag
cttcaggattgtaatgctgctctttcacaacaaaggaaaaggcgacagatacctgcaact
ttggctcctgtggatgatattcagagatatacccaactgaatagttatcctcttcacaaa
accaacaaaccaggcattttgtctctggatatccattatcctaaggacatcattgctact
ggtggagttgattcaaatgctgtggtctttgatcggccttcaggacagattgtatcaaca
ctaagtggtcactcaaagagggttaccaatgtcagatttgctgctgagggtgaactacta
gttactggctcttcagataagacagttcgtgtgtggcaaagctctgaaaatggaaattat
gacagtaggcttactttgaaggatcacagtgcagaggtgcaggctgtcaccgtccatgca
accaataagtactttgtgtctgcttctcttgatggcacatggtgtttttatgatcttgct
tctggcttgtgccttgctcaggtagcagatgcttcagaatctgagggctacacatctgca
gcttttcatcctgatggtttgatccttggagcagggacttcaggggctcaggtcaagata
tgggatgtaaaaactcaggcaaatgttgcaagatttgatgggcatgttggagcagtaact
gcaatttccttctcagaaaatggttatttcttagcaactgcagctcaagacggtgttaaa
ctttgggatttacggaaattaagaaacttcagaaccttttctccttatgatgaagataca
tctactcaatcagtggaatttgaccacagtggaagttatcttgcattaggaggctcagat
ataagagtttatcaagttgcaagtgtaaagtccgattggcattccgtcaaaatcctacct
gacttgtcaggcacaggtaaagcaacatgtctgaagttcggtccagatgcaaagtacata
gctgttggatcgatggatcgaaatttaagaatattcgggctgcctggagaggatcagtca
gagagttag
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integrated database retrieval system
