Lycium barbarum (goji berry): 132605146
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Entry
132605146 CDS
T09483
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb00040
Pentose and glucuronate interconversions
lbb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
132605146
Enzymes [BR:
lbb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
132605146
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
132605146
NCBI-ProteinID:
XP_060174374
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Position
8:complement(93754237..93756344)
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AA seq
366 aa
AA seq
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MEKPSFPCLVSWLLLFSIYSLHVKAMNVIDSCWRSDPKWSTNRKALGNCAKGFGSSTMGG
KNGAFYIVNDASDDPVNPKQGTLRYGVIQTEPLWIIFQKNMLITLKNELIISAYKTIDGR
GAKVEIAYGPCFTIQLVKHVIVHGISLRDCKAAKPGPVRVSPTRVLRRSGTDGDAITIHS
SSKVWIDHCYFARADDGLIDVVHGSTSVTVSNNYLTQHNKVMLLGNQDGLIPDKKMRVTI
AFNHFGPGLHQRMPMVRLGYAHVANNYYEPWNIYAIGGASNPTIFSEGNYFIAGTKKEVT
HRNIASRIKWEKWNWKSSKDAFTHGAFFKPSGSGSANTNYTPSQLFSVAQGSQVPSLTSD
VGPLNL
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacccagttttccctgtttggtttcatggcttctacttttttctatttattca
ttgcatgtgaaagcaatgaacgttatagattcatgttggcgatcagacccaaaatggtct
acaaatcgtaaagctttaggcaattgtgctaaaggctttggtagtagtaccatgggaggg
aaaaacggagcgttttatatcgtaaatgatgcttccgatgaccctgtcaatccaaaacaa
ggcacactccgatacggagtaattcaaaccgaaccactttggattattttccaaaagaac
atgctcattactctaaaaaatgagcttataattagtgcatataaaacaatagatggaaga
ggtgccaaagttgaaatagcttatggaccttgtttcactattcaacttgtgaaacatgtg
atagttcatggaattagcttgcgcgattgtaaggcagctaagcctgggcctgttagagtt
agtcctacccgggttcttcgaaggtcaggtacagatggagatgctatcaccatacatagt
tcttcaaaagtttggatcgatcattgttattttgcacgtgctgatgatggtctcattgat
gtcgtccatggttctactagtgtaactgtctctaacaattaccttacccaacataacaaa
gtgatgctgctggggaaccaagatggacttattcctgacaaaaagatgagagtcacaatt
gctttcaatcattttggtcctggccttcaccaaaggatgccaatggttcggttgggctat
gctcatgttgctaacaattactatgaaccctggaatatttatgcaattggtggagcctct
aatccaactatttttagtgaagggaattacttcattgctggcaccaaaaaagaggttaca
cataggaatattgctagtcgaataaagtgggaaaagtggaattggaagtcgtcgaaagat
gcattcacccatggagctttcttcaaaccttcaggaagtggaagtgcaaatacaaattat
actccatcacagttatttagtgttgctcaaggatcccaagttccttctttgacttctgat
gttggtcctcttaatctgtaa
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