Lycium barbarum (goji berry): 132605601
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Entry
132605601 CDS
T09483
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03022
Basal transcription factors
lbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132605601
09124 Replication and repair
03420 Nucleotide excision repair
132605601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
132605601
03036 Chromosome and associated proteins [BR:
lbb03036
]
132605601
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132605601
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132605601
Transcription machinery [BR:
lbb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132605601
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132605601
DNA repair and recombination proteins [BR:
lbb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132605601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
AAA_11
Motif
Other DBs
NCBI-GeneID:
132605601
NCBI-ProteinID:
XP_060174723
LinkDB
All DBs
Position
8:857809..868028
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQLEDVTVYFPYDNIYPEQYQYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR
LSKPSNPIKLIYCTRTVHEMEKTLAELKLLYNYQLNEFGPGARMLAIGLSSRKNLCVNPN
VVSAENRDSVDAACRKLTASWVRAIAVENPNVPTCPFFENYDAADKAGTSTLPAGVYTLQ
ELRLYGKEKGWCPYFLARHMVQQANVVVYSYQYLLDPKVAGIISKEMERECVVVFDEAHN
IDNVCIEALSVSVRKQTLEGATRNLSRMSQEIERLKDTDAGRLRAEYSRLVEGLAQRLPG
QDVWLANPALPDDIMKEAVPGNIRKAEHFLSVLRRFVQYLKGRLETDNVEKEGPVAFVAS
INTQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTVCDLATLVGTYSRGFSIIIEP
FDERMPHIPDPVLQLTCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWHESGILKDIMQHKLVFIETQDVVETTLALDNYRRACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAKEF
LRKMAQPYDKNGALGKRTLLSQEDLENMVTGPDGEMLL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccaattagaagatgtaacagtttatttcccatatgacaacatatatccagaa
caataccaatacatgttagaactaaaaagagcattagatgcaaaaggtcattgtcttctt
gaaatgccaacaggcactggtaaaacaatagctttactttcattaataacaagttacagg
ttatcaaaaccatcaaatccaattaaacttatttactgtacaagaacagtacatgaaatg
gaaaaaacattagctgagcttaaattattgtataattatcagttaaatgagttcgggccg
ggggcccggatgcttgctatcgggctttcgagtaggaagaatttgtgtgtgaatcctaat
gttgttagtgctgagaatagggatagtgttgatgctgcttgtaggaaattgacagctagt
tgggttagagctattgctgttgagaatcctaatgtgcctacgtgtccgtttttcgagaat
tatgatgctgctgataaggctggtacttcaactctgcctgctggtgtttatactttgcag
gagctaaggctgtatggtaaggagaaaggttggtgcccatactttttggcgaggcatatg
gtgcagcaggcaaatgttgtggtttacagctaccaatacctgcttgatcccaaggttgct
ggtatcatatcaaaggagatggagagagagtgtgtcgtagtgtttgatgaggcccataat
atagataatgtgtgtatcgaagcacttagcgtcagtgtgcgaaaacagacacttgaagga
gcaacacggaatctcagtaggatgtctcaagaaattgaaaggctgaaggacactgatgct
ggtcgattgcgagcagaatatagtcgtcttgttgagggtctagcacaaagactgcctggt
caggatgtatggcttgctaatcctgccttgcctgatgacattatgaaagaagcagtccca
ggaaatataaggaaagcagagcacttcttgtctgttttgcgaagatttgttcagtatctt
aaagggcgtctagagactgataatgtggaaaaggagggtcctgttgcctttgttgcttct
attaatacacaagttggaatcgaccaaaagatgttaaaattttgttatgataggcttcac
tcccttatgttaaccctggagataactgatacagatgagtttctgcatatacaaactgtt
tgtgaccttgccacgttggtggggacgtactctcggggcttttccattataattgaacca
tttgacgagaggatgccacatattcctgatcctgtcctgcagcttacttgtcacgatgcc
tctcttgccataaagcccgtttttgaacgattccagtctgttgtgattacctccgggacc
ctcagtccaattgatctctatccgcgtcttctcaattttaatccggtagttagtcgaagc
ttcaagatgtcattgacgagggattgcatatgcccaatggtccttacgcggggaagtgat
cagcttcctgtaagcactaagtatgacctgagaagcgatccgggcgtcgagaaaaattat
gggaagcttttgcttgaaatggtttcggttgttccagatggggttgtctgtttttttgtc
agttactcttatatggacggaatagtcaatagttggcatgaatcaggaatattaaaggat
ataatgcaacataaactcgtatttattgagacccaggatgttgtagagactacattggct
ttggataattatcgcagggcttgtgattctgggaggggtgcagttttcttctctgttgct
aggggaaaagtggctgaaggtatagactttgatagacactatggcaggcttgttatcatg
tttggcgttccattccaatacacgctaagcagaatattgcttgcacggttggagtatctg
agggagactttccagataaaagagggcgattttctaacttttgatgctttgaggcaagct
gctcaatgtgtgggtcgagttatccgttcaaaggcagattatggcatgatgatttttgct
gacaaaagatatagccgtcatgataagcggtctaagttacctggatggatactttcacat
ttacgggatgctcacttgaacttaagtacagacatggctgtgtatatagcaaaagagttt
ttgagaaaaatggctcagccatatgataagaacggtgcgctgggcaagagaactctactg
tcacaagaagacctagagaatatggtcactggccctgatggggagatgttgctttaa
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integrated database retrieval system
