Lycium barbarum (goji berry): 132605614
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Entry
132605614 CDS
T09483
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
132605614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132605614
Ubiquitin system [BR:
lbb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132605614
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_6
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
132605614
NCBI-ProteinID:
XP_060174750
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Position
8:1043135..1047309
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AA seq
605 aa
AA seq
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MSTLAPHYRTIMVNSLPLEVLEHIFSNIISDKDRNSISLVCKSWYEAERCCRKNVFIGNC
YAVSPSILIKRFPDIRSINIKGKPHFADFDLVPEGWGAFFYPWVDEMAKAYPFLEEIRLK
RMVVCDESLELVAKAFKNFKVLVLQSCEGFTTDGLAAIAANCRNLRELDLGESAVEDLSG
HWLSHFPDSCTSLVSLNIACLASEVSFSALERLVARSPHLKTLRLNRAVPIEKLPKLLRH
ASQLVEFGTGSYSADIQADVSEVFVNVSQAFSGCNQLKGLSGFWEAVPAYFPTIYPVHSR
LTSLNLSYATIQIPELGKVISDCNNLQRLWVLDYVEDSGLEEIANSCKELQELRVFPSDP
FAPGPNVSLTEQGLVAISAGCPKLQSVLYFCRQMTNSALVTIARNRPNMIRFRLCIIEPR
TRDYLTLEPLDSGFGAIVQHCKELRRLSVSGLLTDCVFEYIGAHAKKLEMLSLAFAGDSD
LGLHYVLSGCESLRKLEIRDCPFGDEALLANAAKLETMRSLWMSNCSVSFEACKLLGRKL
PELNVEVIDERGHPDTRPESCPVEKLYIYRTVSGRRFDTPGFVWIIDEDEALTRYSNGNC
SVASA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactttagcccctcattaccgtacaataatggtaaattcacttccattagaagta
ctagaacacatattttcaaacataatatcagacaaagacaggaactcaatatccttagta
tgtaaatcttggtatgaagctgaacgttgttgtaggaaaaatgtatttataggaaactgt
tatgctgttagtccatcaatcttgatcaaaagatttccagatattagatctataaacatt
aaagggaaaccacattttgctgattttgatttagtacctgaaggatggggtgcatttttt
tatccatgggttgatgaaatggctaaagcatatccatttcttgaggaaattagacttaag
agaatggttgtttgtgatgagtcattggagttggttgctaaggcttttaagaattttaaa
gtcttggttttacagtcttgtgaaggatttactactgatggacttgctgctattgctgct
aactgcaggaatctgagggaacttgacttgggagaaagtgcagtggaagacttgagtggc
cattggcttagccattttcctgatagctgcacatcgctcgtgtcacttaacattgcttgt
ttggcttctgaagtcagcttttcagctttggaacgtctagttgctcgctcgcctcatcta
aaaactcttcggctcaatcgtgctgtgcccatcgagaaactgcccaagctacttcgccat
gcttcccagttggttgaatttggtaccgggtcctactctgctgacatacaagctgatgtt
tccgaagttttcgtaaacgtatctcaagctttttcgggttgcaatcaactcaaaggcttg
agtggtttttgggaagccgtgccagcctactttccaactatatatccagtccactcccga
ctcacctctttgaatttaagctatgctaccattcaaatacctgaacttggcaaggtcatc
agcgattgtaacaatttgcagcggttatgggtgctagattatgttgaagatagcggtctt
gaagagattgccaactcttgtaaagaacttcaagagcttagggtttttccttctgatcca
tttgctccgggaccaaatgtatccttgactgagcaaggtcttgtagctatctcagctggc
tgccctaaacttcagtcagttttatacttttgtcgccaaatgactaattccgccttggtt
actatcgcaaggaaccgtcctaatatgatccgatttcgtttgtgtattatcgaacctcga
actcgtgattacttaaccctagaaccgcttgattccggttttggtgccattgttcaacac
tgcaaggaattgcgacgactttccgtttcgggtctccttacggattgtgtgttcgagtac
atcggggcccatgctaagaagttagagatgctttccttagcttttgccggggatagtgat
ctgggtctccactacgtgctctctggttgtgaaagcctccgtaagttggaaattagagat
tgcccttttggcgacgaggctctgttggctaatgctgcaaagctggagacaatgcgatcc
ctttggatgtctaattgttcggtaagttttgaagcatgtaagctgctaggtcgaaagttg
ccagaacttaatgttgaagtcatagatgagaggggtcatcctgatacgagaccggaaagt
tgccccgttgagaaactttacatatacaggacagtgtcgggccggaggttcgacactccc
ggttttgtttggataatcgatgaagatgaagctttgactagatatagcaacgggaattgc
tcggtggcttctgcttag
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